Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8PR3	17833	2024-07-22	2023-07-12	3.9	4.21	3.80	4.0	0.006	1.08	0.0	0.05	17.80	0.01	2.278	6.13	0.67	3.0	96.9	0.0	-1.20	0.80	0.83	1.45	3.9	0.003	0.66	0.0	0.04	17.99	0.00	2.134	13.03	2.93	2.8	97.2	0.0	1.33	0.43	0.80	0.84	1.38	17888	2221	9	0	0	0	0	logfile
✔	8P3Y	17399	2024-07-22	2023-05-18	3.55	3.90	3.43	3.6	0.013	1.69	1.0	0.12	14.45	0.01	2.163	11.07	2.22	4.4	95.0	0.5	-1.70	0.61	0.66	1.59	3.6	0.004	0.70	0.0	0.04	15.04	0.00	2.155	13.02	2.52	2.9	97.0	0.1	1.65	0.87	0.67	0.82	1.62	17012	2291	8	0	0	0	0	logfile
✔	8Q9M	18286	2024-07-19	2023-08-20	2.65	2.53	2.47	2.7	0.011	1.76	0.0	0.09	11.56	0.01	2.640	0.28	0.00	1.8	98.2	0.0	-1.02	0.33	0.79	6.36	2.6	0.003	0.54	0.0	0.05	15.74	0.00	2.301	1.42	0.51	0.9	99.1	0.0	-1.56	1.18	0.41	0.90	6.14	7032	450	6	0	0	0	3588	logfile
✔	8W20	43736	2024-07-21	2024-02-19	4.3	4.55	4.30	4.4	0.008	1.34	2.0	0.06	6.79	0.01	2.278	1.60	0.45	2.6	97.2	0.3	1.23	0.68	0.69	—	4.5	0.008	0.88	0.0	0.05	8.66	0.01	2.143	6.84	0.00	6.7	93.3	0.0	0.24	1.85	0.70	0.73	—	15412	2814	11	0	0	0	0	logfile
✔	8PD3	17599	2024-07-19	2023-06-11	3.3	2.29	3.23	2.1	0.003	0.56	0.0	0.04	13.67	0.00	2.227	4.23	0.00	1.3	98.7	0.0	0.70	0.61	0.78	2.84	2.1	0.003	0.51	0.0	0.04	15.68	0.00	2.163	5.56	2.94	1.5	98.5	0.0	2.38	0.96	0.67	0.81	2.04	8121	1028	1	0	0	0	0	logfile
✔	8UMX	42387	2024-07-19	2023-10-18	4.0	5.63	3.86	4.0	0.003	0.77	0.0	0.04	17.12	0.00	2.173	17.66	0.50	5.0	94.9	0.1	-0.01	0.52	0.81	—	4.0	0.002	0.73	0.0	0.04	17.36	0.00	2.157	16.08	2.39	4.1	95.7	0.1	0.58	1.74	0.54	0.85	—	7166	906	6	0	0	0	0	logfile
✔	8J6S	36013	2024-07-20	2023-04-26	3.8	5.06	3.99	3.8	0.004	0.79	0.0	0.04	29.58	0.01	1.907	22.08	1.06	3.9	96.1	0.0	-0.40	0.83	0.73	1.29	3.9	0.005	0.83	0.0	0.04	30.01	0.01	1.991	24.17	4.76	3.7	96.3	0.0	0.21	1.29	0.88	0.84	0.57	10030	933	12	197	0	0	0	logfile
✔	8THU	41272	2024-07-20	2023-07-18	3.1	3.86	3.08	3.2	0.004	0.68	0.0	0.04	28.56	0.01	1.528	5.35	0.00	2.2	97.8	0.0	1.40	0.93	0.89	2.77	3.2	0.003	0.56	0.0	0.03	28.34	0.00	2.226	8.63	1.78	2.3	97.7	0.0	2.76	0.27	0.93	0.90	1.90	11902	760	10	291	0	0	0	logfile
✔	8CBQ	16549	2024-07-21	2023-01-25	4.0	4.37	3.88	4.2	0.008	0.72	0.0	0.04	26.20	0.01	2.284	3.83	1.82	3.9	96.1	0.0	-5.85	0.75	0.74	—	4.2	0.005	0.80	0.0	0.04	27.71	0.01	2.040	21.13	5.05	4.1	95.9	0.0	0.03	1.95	0.78	0.81	—	12959	853	11	300	0	0	0	logfile
✔	8PEP	17634	2024-07-21	2023-06-14	3.33	4.07	3.32	3.4	0.004	0.72	0.0	0.05	28.76	0.01	2.092	9.54	0.13	1.9	98.1	0.0	0.85	0.92	0.87	1.55	3.4	0.004	0.61	0.0	0.03	27.41	0.00	2.096	11.09	1.27	3.0	97.0	0.0	2.17	2.44	0.94	0.91	1.75	13492	939	12	294	0	0	0	logfile
✔	8JZZ	36755	2024-07-19	2023-07-06	3.31	3.67	3.40	3.7	0.002	0.54	0.0	0.04	13.17	0.00	2.205	9.02	0.24	4.4	95.6	0.0	-0.38	0.61	0.70	2.06	3.7	0.002	0.55	0.0	0.04	15.11	0.00	2.141	9.20	2.28	4.1	95.9	0.0	-0.16	0.97	0.59	0.70	2.07	8680	1198	6	0	0	0	0	logfile
✔	8PD7	17602	2024-07-19	2023-06-11	3.4	2.32	3.31	2.1	0.003	0.59	0.0	0.04	12.69	0.00	2.276	3.44	0.11	1.5	98.5	0.0	1.39	0.62	0.78	2.65	2.1	0.003	0.54	0.0	0.04	15.85	0.00	2.218	5.92	2.72	2.5	97.5	0.0	2.32	0.99	0.69	0.81	2.03	8121	1028	1	0	0	0	0	logfile
✔	8P3T	17394	2024-07-22	2023-05-18	3.39	3.89	3.20	3.5	0.012	1.40	7.0	0.10	15.56	0.01	2.226	11.91	4.78	2.5	97.1	0.4	-0.20	0.62	0.72	2.31	3.5	0.006	0.67	0.0	0.04	15.70	0.00	2.103	12.27	3.17	1.8	98.2	0.0	2.14	0.74	0.67	0.84	2.18	16861	2237	8	0	0	0	0	logfile
✔	8FCJ	28980	2024-07-25	2022-12-01	2.83	3.46	2.93	3.2	0.003	0.56	0.0	0.04	19.33	0.00	2.120	9.78	2.91	5.5	94.2	0.3	0.58	0.82	0.86	3.35	3.2	0.004	0.58	0.0	0.04	19.38	0.00	2.161	9.50	3.10	5.4	94.3	0.2	0.55	1.09	0.83	0.87	3.24	26820	2979	15	113	0	0	0	logfile
✔	8X82	38133	2024-07-20	2023-11-27	2.8	2.70	2.78	2.9	0.002	0.41	0.0	0.03	16.43	0.00	2.181	5.24	0.84	0.8	99.2	0.0	3.68	0.57	0.78	2.85	2.9	0.002	0.40	0.0	0.03	16.97	0.00	2.209	5.36	1.53	1.3	98.7	0.0	3.58	0.37	0.62	0.82	2.78	12004	1520	4	0	0	0	0	logfile
✔	8P7W	17537	2024-07-21	2023-05-31	3.04	3.33	3.02	3.3	0.004	0.72	0.0	0.04	15.99	0.00	2.206	9.76	0.45	6.1	93.9	0.0	-1.44	0.65	0.86	2.29	3.4	0.003	0.63	0.0	0.04	16.54	0.00	2.087	10.49	3.44	6.1	93.9	0.0	-0.45	0.36	0.66	0.87	2.29	14380	1852	8	0	0	0	0	logfile
✔	8FUK	29459	2024-07-23	2023-01-17	3.36	3.71	3.47	3.7	0.003	0.56	0.0	0.04	17.11	0.01	2.068	8.01	0.24	4.4	95.6	0.0	0.29	0.78	0.85	2.82	3.7	0.002	0.51	0.0	0.04	17.52	0.00	2.182	8.18	3.26	4.2	95.8	0.0	0.59	0.34	0.74	0.82	2.51	23608	2784	11	60	0	0	0	logfile
✔	8TXW	41707	2024-07-20	2023-08-24	3.6	3.90	3.54	3.7	0.004	0.54	0.0	0.03	26.88	0.00	1.328	7.51	0.14	2.0	98.0	0.0	2.65	0.85	0.87	0.96	3.7	0.004	0.58	0.0	0.03	27.35	0.00	2.163	7.72	0.83	2.5	97.4	0.1	2.54	0.35	0.88	0.89	0.69	12835	857	12	294	0	0	0	logfile
✔	8Q7M	18224	2024-07-19	2023-08-16	3.26	3.16	3.21	3.3	0.011	1.96	4.0	0.11	11.70	0.01	2.490	0.38	0.17	3.1	96.9	0.0	-1.88	0.32	0.70	3.84	3.2	0.006	0.76	0.0	0.05	15.05	0.00	2.219	6.33	1.88	1.8	98.2	0.0	-1.83	0.84	0.36	0.87	4.15	5109	669	9	0	0	0	0	logfile
✔	8HR1	34956	2024-07-20	2022-12-14	3.02	2.38	2.94	3.0	0.010	0.80	0.0	0.05	26.09	0.01	2.255	8.44	0.16	3.1	96.9	0.0	-5.09	0.84	0.81	2.82	2.9	0.004	0.59	0.0	0.03	28.13	0.00	2.131	10.13	3.44	2.8	97.2	0.0	1.83	1.25	0.89	0.89	1.90	12110	765	11	294	0	0	0	logfile

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