Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PB1	20285	2024-07-19	2019-06-12	2.8	3.39	—	3.4	0.003	0.79	0.0	0.06	9.37	0.01	2.288	4.32	0.00	1.9	98.1	0.0	-2.93	0.56	0.75	2.79	3.4	0.004	0.59	0.0	0.04	15.22	0.00	2.202	7.79	3.76	3.0	97.0	0.0	0.87	0.74	0.50	0.75	2.57	8785	1069	7	0	9	0	0	logfile
✔	8GPN	34195	2024-07-21	2022-08-26	3.2	3.80	3.24	3.4	0.007	0.62	0.0	0.04	26.21	0.00	2.193	8.82	0.11	2.6	97.4	0.0	1.29	0.84	0.80	3.26	3.4	0.003	0.59	0.0	0.03	26.42	0.00	2.142	9.99	1.12	2.5	97.5	0.1	2.69	1.56	0.86	0.85	1.96	15047	1211	11	292	0	0	0	logfile
✔	7SGD	25107	2024-07-20	2021-10-05	3.97	4.40	3.79	4.1	0.024	1.80	3.0	0.17	14.41	0.01	2.477	1.47	0.00	1.8	98.2	0.0	0.20	0.84	0.81	2.57	4.1	0.004	0.91	0.0	0.05	15.02	0.00	2.277	15.34	3.84	4.9	95.1	0.0	0.42	1.50	0.85	0.83	2.03	9120	1014	39	0	75	0	0	logfile
✔	7DFL	30665	2024-07-19	2020-11-09	3.3	4.03	—	3.9	0.008	0.95	0.0	0.06	11.97	0.01	1.910	9.78	0.00	6.1	93.9	0.0	-0.96	0.63	0.75	2.51	3.9	0.003	0.74	0.0	0.04	15.80	0.00	2.103	13.14	3.66	4.1	95.9	0.0	-0.12	0.91	0.56	0.73	1.93	8987	1133	6	0	1	0	0	logfile
✔	7F57	31460	2024-07-25	2021-06-21	3.8	4.25	—	4.0	0.007	0.99	3.0	0.10	14.80	0.02	2.061	17.20	0.60	8.4	91.6	0.0	-2.23	0.74	0.82	1.65	4.0	0.006	0.76	0.0	0.04	15.17	0.00	2.163	14.75	1.83	6.9	93.1	0.0	-0.78	1.42	0.75	0.83	1.55	27863	3468	15	0	29	0	0	logfile
✔	6T93	10408	2024-07-20	2019-10-25	3.49	4.10	—	3.7	0.014	1.15	0.0	0.06	27.10	0.01	2.435	0.74	0.00	0.3	99.7	0.0	0.78	0.87	0.85	2.94	3.7	0.005	0.68	0.0	0.04	27.76	0.00	2.095	12.00	4.29	2.3	97.7	0.0	2.59	1.86	0.87	0.88	1.91	12199	758	10	302	0	0	0	logfile
✔	7CRo	30453	2024-07-23	2020-08-14	3.75	3.86	—	3.8	0.006	0.74	1.0	0.04	27.72	0.00	1.421	10.71	1.45	8.7	91.3	0.0	-5.38	0.78	0.83	2.26	3.8	0.005	0.64	0.0	0.04	27.95	0.00	2.181	7.60	2.42	7.9	92.1	0.0	-2.76	0.48	0.79	0.84	1.40	14797	999	12	336	4	0	0	logfile
✔	6oiJ	20078	2024-07-19	2019-04-09	3.3	3.38	—	3.3	0.006	0.94	0.0	0.06	15.71	0.01	2.236	5.95	0.77	4.9	95.1	0.0	-3.70	0.68	0.81	2.83	3.3	0.005	0.70	0.0	0.05	16.31	0.00	2.027	10.52	3.21	4.1	95.9	0.0	-0.51	0.46	0.69	0.84	2.43	8877	1152	6	0	3	0	0	logfile
✔	8B8G	15913	2024-07-20	2022-10-04	3.39	3.99	3.34	3.8	0.004	0.56	0.0	0.04	13.75	0.01	2.096	11.04	7.59	4.2	95.8	0.0	0.87	0.66	0.82	2.32	3.8	0.002	0.54	0.0	0.04	15.18	0.00	2.170	10.34	3.87	3.2	96.8	0.0	1.45	1.89	0.64	0.80	1.70	12086	1464	2	0	0	0	0	logfile
✔	7LX3	23565	2024-07-22	2021-03-03	3.45	3.77	—	3.6	0.021	1.74	6.0	0.11	12.95	0.01	2.198	1.38	0.10	0.9	99.1	0.0	1.02	0.81	0.85	3.06	3.6	0.004	0.67	0.0	0.04	12.50	0.00	2.173	7.17	2.19	3.0	97.0	0.0	0.42	1.62	0.79	0.83	2.75	20196	2322	54	0	144	0	0	logfile
✔	7XA3	33086	2024-07-20	2022-03-17	2.9	2.18	—	2.1	0.005	0.85	0.0	0.05	7.87	0.01	2.250	4.13	0.00	2.5	97.5	0.0	0.60	0.75	0.74	3.21	1.7	0.003	0.61	0.0	0.04	13.92	0.00	2.182	8.84	3.04	3.4	96.6	0.0	1.55	1.16	0.78	0.79	2.66	9591	1220	6	0	0	0	0	logfile
✔	6Bo5	7119	2024-07-22	2017-11-18	3.6	3.71	—	3.6	0.005	1.08	0.0	0.05	12.89	0.01	2.277	11.47	1.84	9.1	90.5	0.4	-5.44	0.66	0.72	1.16	3.6	0.003	0.78	0.0	0.04	14.72	0.00	2.181	14.23	2.36	7.7	92.3	0.0	-0.65	1.45	0.66	0.70	0.84	17236	2228	4	0	0	0	0	logfile
✔	7DPW	30811	2024-07-22	2020-12-21	2.65	2.76	2.62	2.7	0.008	0.80	0.0	0.05	19.09	0.01	2.044	9.27	7.41	6.1	93.7	0.2	-3.36	0.73	0.82	3.06	2.8	0.003	0.67	0.0	0.04	18.82	0.00	2.168	6.63	3.65	4.3	95.5	0.2	0.20	1.15	0.74	0.83	2.82	17812	2224	12	0	16	32	0	logfile
✔	7LXN	23572	2024-07-23	2021-03-04	3.85	4.32	—	4.1	0.020	1.79	3.0	0.11	15.74	0.01	2.257	1.91	0.52	1.3	98.6	0.1	0.84	0.81	0.80	2.22	4.1	0.004	0.75	0.0	0.05	13.31	0.00	2.090	11.80	2.28	3.3	96.7	0.0	0.41	1.32	0.81	0.80	2.42	20820	2373	60	0	159	0	0	logfile
✔	7KAU	22784	2024-07-20	2020-10-01	4.0	4.56	4.11	4.3	0.003	0.56	0.0	0.04	12.12	0.00	2.251	6.32	0.00	3.2	96.8	0.0	-0.93	0.64	0.84	—	4.3	0.004	0.64	0.0	0.04	14.44	0.00	2.116	9.53	2.43	3.7	96.3	0.0	2.16	1.36	0.65	0.85	—	10711	1340	7	0	56	0	0	logfile
✔	7AMV	11824	2024-07-28	2020-10-09	2.8	2.93	—	2.9	0.003	0.54	0.0	0.04	11.79	0.00	2.075	2.80	0.41	2.8	97.2	0.0	0.59	0.72	0.78	3.62	2.8	0.005	0.64	0.0	0.04	16.38	0.00	2.052	8.19	2.19	4.0	96.0	0.0	0.24	0.98	0.76	0.84	3.64	45172	5348	16	84	5	0	0	logfile
✔	6GTE	0063	2024-07-20	2018-06-18	4.07	3.99	—	3.9	0.009	1.11	0.0	0.06	17.33	0.01	2.232	8.08	0.75	15.6	84.3	0.1	-5.76	0.73	0.71	—	3.9	0.004	0.66	0.0	0.04	17.49	0.00	2.118	15.42	0.00	9.1	90.9	0.0	-3.23	0.78	0.73	0.71	—	10872	1274	4	67	0	0	0	logfile
✔	7X9A	33069	2024-07-19	2022-03-15	3.2	3.87	—	3.6	0.002	0.49	0.0	0.04	10.39	0.00	2.251	7.09	0.00	3.0	97.0	0.0	-2.79	0.67	0.69	1.31	3.6	0.004	0.72	0.0	0.04	14.56	0.00	2.236	14.76	3.44	5.2	94.8	0.0	-0.65	0.75	0.70	0.81	1.67	7156	950	5	0	0	0	0	logfile
✔	6GTC	0061	2024-07-20	2018-06-18	3.91	3.85	—	3.8	0.004	0.94	0.0	0.05	16.56	0.01	2.275	5.90	0.86	8.8	91.2	0.0	-5.69	0.70	0.67	1.97	3.8	0.003	0.70	0.0	0.04	19.10	0.00	2.119	14.35	3.61	7.5	92.5	0.0	-2.76	0.77	0.72	0.70	1.50	11931	1280	4	65	0	0	0	logfile
✔	7N9Y	24264	2024-07-19	2021-06-18	4.8	4.30	—	2.2	0.019	1.07	0.0	0.00	6.04	0.00	2.538	0.59	0.00	8.5	91.1	0.3	-1.98	0.49	0.33	—	2.2	0.003	1.01	0.0	0.00	4.81	0.00	2.550	7.73	0.00	18.2	81.3	0.5	-4.24	2.61	0.52	0.31	—	7515	2505	2	0	0	0	0	logfile

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