Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Y3E	33592	2024-07-21	2022-06-10	2.8	2.97	2.80	3.1	0.004	0.71	0.0	0.04	14.07	0.00	2.197	12.01	0.00	6.0	94.0	0.0	0.52	0.64	0.80	2.34	3.1	0.004	0.59	0.0	0.04	17.15	0.00	2.202	9.82	3.88	4.6	95.4	0.0	1.27	0.46	0.63	0.82	2.00	14572	1856	4	0	4	0	0	logfile
✔	8H9F	34565	2024-07-21	2022-10-25	2.69	3.04	2.84	3.0	0.005	0.69	0.0	0.04	14.64	0.01	2.198	7.68	0.16	2.4	97.6	0.0	-2.36	0.66	0.86	3.41	3.1	0.003	0.84	1.0	0.04	16.43	0.00	2.198	7.96	1.59	1.5	98.5	0.0	2.49	1.13	0.55	0.83	2.75	12265	1596	22	0	3	0	0	logfile
✔	8P7W	17537	2024-07-21	2023-05-31	3.04	3.33	3.02	3.3	0.004	0.72	0.0	0.04	15.99	0.00	2.206	9.76	0.45	6.1	93.9	0.0	-1.44	0.65	0.86	2.29	3.4	0.003	0.63	0.0	0.04	16.54	0.00	2.087	10.49	3.44	6.1	93.9	0.0	-0.45	0.36	0.66	0.87	2.29	14380	1852	8	0	0	0	0	logfile
✔	8JZZ	36755	2024-07-19	2023-07-06	3.31	3.67	3.40	3.7	0.002	0.54	0.0	0.04	13.17	0.00	2.205	9.02	0.24	4.4	95.6	0.0	-0.38	0.61	0.70	2.06	3.7	0.002	0.55	0.0	0.04	15.11	0.00	2.141	9.20	2.28	4.1	95.9	0.0	-0.16	0.97	0.59	0.70	2.07	8680	1198	6	0	0	0	0	logfile
✔	8P0G	17333	2024-07-20	2023-05-10	3.17	3.78	3.18	3.2	0.002	0.42	0.0	0.04	16.06	0.00	1.965	5.02	0.17	3.7	96.2	0.1	0.93	0.91	0.84	2.75	3.3	0.003	0.56	0.0	0.04	16.92	0.00	2.021	8.75	2.15	5.1	94.8	0.1	0.97	0.62	0.93	0.90	2.87	11331	1356	6	19	1	0	0	logfile
✔	8C1S	16382	2024-07-20	2022-12-21	3.0	2.82	2.84	3.1	0.012	1.29	0.0	0.08	17.43	0.03	2.234	5.50	1.87	6.0	93.9	0.1	1.35	0.61	0.86	4.05	3.0	0.004	0.61	0.0	0.04	16.72	0.00	2.216	5.64	2.71	4.5	95.5	0.0	3.15	1.02	0.67	0.90	3.35	10668	1318	21	0	14	8	0	logfile
✔	8HYA	35085	2024-07-21	2023-01-06	3.4	3.97	3.56	3.9	0.004	0.71	0.0	0.04	13.95	0.01	2.242	13.12	0.00	5.9	94.1	0.0	0.88	0.62	0.77	1.40	3.9	0.003	0.67	0.0	0.04	16.45	0.00	2.199	12.78	3.38	6.2	93.8	0.0	1.36	0.46	0.58	0.74	0.87	14586	1856	4	0	6	0	0	logfile
✔	8TCo	41156	2024-07-21	2023-07-02	2.8	2.31	—	2.1	0.003	0.64	0.0	0.05	14.09	0.01	2.138	8.05	0.00	3.5	96.5	0.0	-0.22	0.76	0.75	3.03	2.1	0.004	0.67	0.0	0.05	15.61	0.00	2.115	11.68	2.21	4.2	95.8	0.0	-0.11	1.02	0.77	0.77	2.75	13222	1633	12	0	15	0	0	logfile
✔	8P8A	17543	2024-07-21	2023-05-31	3.2	3.30	3.14	3.3	0.006	1.01	0.0	0.06	17.65	0.01	2.213	4.01	10.55	7.2	92.7	0.1	-3.83	0.61	0.84	3.07	3.3	0.004	0.65	0.0	0.04	16.61	0.00	2.152	6.04	4.55	6.8	93.1	0.1	-0.40	1.57	0.60	0.87	3.15	13337	1709	9	0	4	0	0	logfile
✔	8BWR	16295	2024-07-20	2022-12-07	4.0	4.17	3.97	4.1	0.010	0.93	0.0	0.05	13.67	0.01	2.203	7.58	0.96	3.7	96.3	0.0	-1.63	0.65	0.78	—	4.1	0.003	0.68	0.0	0.04	16.05	0.00	2.247	13.36	3.17	2.4	97.6	0.0	1.51	2.65	0.71	0.80	—	9570	1195	2	0	1	0	0	logfile
✔	7YVB	34122	2024-07-20	2022-08-19	2.9	2.91	2.82	3.1	0.007	0.78	0.0	0.05	14.82	0.00	2.215	13.18	1.17	4.7	95.3	0.0	-0.41	0.72	0.84	3.06	3.1	0.003	0.63	0.0	0.04	15.68	0.00	2.228	9.61	2.18	4.7	95.2	0.1	0.60	0.38	0.69	0.84	2.81	11889	1425	21	0	30	0	0	logfile
✔	8PD7	17602	2024-07-19	2023-06-11	3.4	2.32	3.31	2.1	0.003	0.59	0.0	0.04	12.69	0.00	2.276	3.44	0.11	1.5	98.5	0.0	1.39	0.62	0.78	2.65	2.1	0.003	0.54	0.0	0.04	15.85	0.00	2.218	5.92	2.72	2.5	97.5	0.0	2.32	0.99	0.69	0.81	2.03	8121	1028	1	0	0	0	0	logfile
✔	8P3T	17394	2024-07-22	2023-05-18	3.39	3.89	3.20	3.5	0.012	1.40	7.0	0.10	15.56	0.01	2.226	11.91	4.78	2.5	97.1	0.4	-0.20	0.62	0.72	2.31	3.5	0.006	0.67	0.0	0.04	15.70	0.00	2.103	12.27	3.17	1.8	98.2	0.0	2.14	0.74	0.67	0.84	2.18	16861	2237	8	0	0	0	0	logfile
✔	8FCJ	28980	2024-07-25	2022-12-01	2.83	3.46	2.93	3.2	0.003	0.56	0.0	0.04	19.33	0.00	2.120	9.78	2.91	5.5	94.2	0.3	0.58	0.82	0.86	3.35	3.2	0.004	0.58	0.0	0.04	19.38	0.00	2.161	9.50	3.10	5.4	94.3	0.2	0.55	1.09	0.83	0.87	3.24	26820	2979	15	113	0	0	0	logfile
✔	8X82	38133	2024-07-20	2023-11-27	2.8	2.70	2.78	2.9	0.002	0.41	0.0	0.03	16.43	0.00	2.181	5.24	0.84	0.8	99.2	0.0	3.68	0.57	0.78	2.85	2.9	0.002	0.40	0.0	0.03	16.97	0.00	2.209	5.36	1.53	1.3	98.7	0.0	3.58	0.37	0.62	0.82	2.78	12004	1520	4	0	0	0	0	logfile
✔	8JPF	36478	2024-07-18	2023-06-11	3.02	3.21	3.41	3.3	0.008	0.81	0.0	0.04	18.98	0.00	2.214	5.45	0.46	2.7	97.3	0.0	2.25	0.48	0.75	2.58	3.3	0.003	0.70	0.0	0.04	17.72	0.00	2.069	7.49	2.75	3.4	96.6	0.0	1.99	0.93	0.45	0.78	2.68	2269	304	3	0	1	0	0	logfile
✔	8EEA	28049	2024-07-24	2022-09-06	2.6	2.80	—	2.9	0.003	0.52	0.0	0.04	15.18	0.00	1.983	1.97	0.00	3.7	96.3	0.0	0.61	0.64	0.79	3.14	2.9	0.002	0.50	0.0	0.04	17.46	0.00	2.096	3.55	1.17	3.3	96.7	0.0	1.06	1.17	0.68	0.83	2.77	24480	3017	12	0	4	0	0	logfile
✔	8TXW	41707	2024-07-20	2023-08-24	3.6	3.90	3.54	3.7	0.004	0.54	0.0	0.03	26.88	0.00	1.328	7.51	0.14	2.0	98.0	0.0	2.65	0.85	0.87	0.96	3.7	0.004	0.58	0.0	0.03	27.35	0.00	2.163	7.72	0.83	2.5	97.4	0.1	2.54	0.35	0.88	0.89	0.69	12835	857	12	294	0	0	0	logfile
✔	8Q7M	18224	2024-07-19	2023-08-16	3.26	3.16	3.21	3.3	0.011	1.96	4.0	0.11	11.70	0.01	2.490	0.38	0.17	3.1	96.9	0.0	-1.88	0.32	0.70	3.84	3.2	0.006	0.76	0.0	0.05	15.05	0.00	2.219	6.33	1.88	1.8	98.2	0.0	-1.83	0.84	0.36	0.87	4.15	5109	669	9	0	0	0	0	logfile
✔	8iEG	35381	2024-07-21	2023-02-15	3.44	4.03	3.54	3.3	0.004	0.60	0.0	0.04	25.79	0.00	1.714	11.46	1.43	1.8	98.2	0.0	0.84	0.86	0.77	1.73	3.3	0.003	0.67	0.0	0.04	26.86	0.00	2.136	14.23	2.14	2.5	97.5	0.0	1.50	0.77	0.91	0.86	1.43	14102	1035	15	294	4	0	0	logfile

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