Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6EM4	3889	2024-07-28	2017-10-01	4.1	4.76	—	4.0	0.008	1.44	0.0	0.12	22.90	0.00	0.855	2.35	0.00	7.5	90.4	2.1	-3.71	0.66	0.57	—	4.0	0.003	0.79	0.0	0.03	26.13	0.00	2.007	14.19	0.00	13.2	86.7	0.1	-2.29	3.70	0.81	0.63	—	45400	6013	37	1779	0	0	0	logfile
✔	6G4W	4349	2024-07-28	2018-03-28	4.5	5.22	—	4.4	0.006	1.11	2.0	0.07	23.58	0.01	0.760	5.05	0.00	8.2	91.5	0.3	-3.51	0.65	0.51	—	4.3	0.002	0.57	0.0	0.03	24.29	0.00	2.097	6.33	0.00	6.9	93.0	0.0	0.20	2.48	0.87	0.63	—	45223	4589	31	1563	768	0	0	logfile
✔	6W6K	21558	2024-07-28	2020-03-17	3.6	3.84	—	3.7	0.002	0.47	0.0	0.03	23.24	0.00	2.113	10.37	0.00	6.9	93.1	0.0	-4.28	0.70	0.59	0.52	3.7	0.005	0.79	2.0	0.04	23.88	0.01	1.861	18.44	5.10	11.2	88.8	0.0	-2.90	0.89	0.74	0.66	0.52	46934	1873	19	1534	1	0	0	logfile
✔	8C96	16503	2024-07-28	2023-01-21	4.43	5.03	4.86	4.4	0.001	0.36	0.0	0.03	22.54	0.00	1.928	6.57	0.08	3.8	96.1	0.1	0.57	0.83	0.79	—	4.4	0.006	0.74	0.0	0.04	24.03	0.01	1.999	39.57	0.00	8.3	91.7	0.0	-1.84	0.94	0.84	0.85	—	44214	1607	16	1475	0	0	0	logfile
✔	5XYU	6790	2024-07-28	2017-07-10	3.45	3.46	—	3.4	0.006	1.04	0.0	0.10	24.53	0.00	1.633	6.91	1.66	6.1	91.6	2.3	-3.66	0.69	0.79	2.23	3.4	0.004	0.67	1.0	0.04	24.09	0.01	1.997	10.56	3.99	6.3	92.9	0.8	-0.44	0.64	0.77	0.85	1.37	45157	1966	22	1379	48	0	0	logfile
✔	6W7N	21572	2024-07-27	2020-03-19	3.4	3.72	—	3.6	0.002	0.46	0.0	0.03	22.81	0.00	1.907	8.12	0.08	8.2	91.5	0.3	-4.03	0.78	0.78	1.44	3.6	0.007	0.78	0.0	0.04	23.04	0.01	2.075	13.25	5.28	12.6	87.0	0.4	-2.52	1.26	0.81	0.83	1.34	42287	1660	15	1372	0	0	0	logfile
✔	6NQB	0482	2024-07-28	2019-01-20	3.8	4.35	—	4.0	0.006	0.98	0.0	0.05	24.16	0.01	2.216	7.99	0.41	13.6	86.3	0.1	-5.36	0.86	0.79	0.88	4.0	0.003	0.69	0.0	0.04	24.07	0.00	2.042	20.69	4.88	13.0	86.9	0.1	-2.99	0.76	0.86	0.79	0.59	42570	1752	17	1341	1	0	0	logfile
✔	8C95	16502	2024-07-27	2023-01-21	4.92	6.10	5.53	4.8	0.002	0.42	0.0	0.03	23.21	0.00	1.886	8.94	0.09	5.1	94.9	0.0	0.20	0.84	0.82	—	4.8	0.005	0.76	0.0	0.04	24.56	0.01	1.894	49.45	0.00	10.6	89.4	0.0	-1.86	1.96	0.85	0.86	—	40172	1460	16	1339	0	0	0	logfile
✔	8C97	16504	2024-07-27	2023-01-21	4.07	4.81	4.16	4.0	0.002	0.39	0.0	0.03	23.09	0.00	1.904	5.95	0.00	4.6	95.2	0.2	0.72	0.80	0.75	—	4.0	0.004	0.62	0.0	0.03	23.84	0.00	1.806	22.25	0.00	8.3	91.4	0.3	-1.49	0.75	0.80	0.83	—	36163	1077	12	1292	0	0	0	logfile
✔	8CDV	16596	2024-07-28	2023-02-01	4.73	3.73	4.59	3.7	0.009	1.44	2.0	0.11	24.69	0.02	1.187	13.24	3.68	3.0	96.0	0.9	-1.91	0.67	0.66	—	3.6	0.002	0.61	0.0	0.04	23.46	0.00	2.081	16.47	0.11	2.4	97.4	0.2	0.34	1.23	0.66	0.61	—	43593	2094	19	1258	0	0	0	logfile
✔	7WTN	32792	2024-07-28	2022-02-05	3.4	3.34	—	3.3	0.005	0.83	0.0	0.04	22.05	0.01	2.114	5.74	0.09	8.3	91.7	0.1	-1.93	0.83	0.84	2.55	3.3	0.004	0.63	0.0	0.04	21.92	0.01	2.047	10.13	2.50	8.9	91.0	0.2	-0.73	1.10	0.85	0.86	2.28	46427	2635	19	1200	1	0	0	logfile
✔	7WTo	32793	2024-07-28	2022-02-05	3.5	3.41	—	3.3	0.005	0.84	0.0	0.04	22.20	0.01	2.105	6.35	0.05	7.9	92.0	0.1	-2.03	0.85	0.84	2.16	3.3	0.006	0.74	0.0	0.04	22.19	0.01	2.066	11.99	2.71	10.1	89.7	0.2	-1.17	0.32	0.85	0.84	2.03	44490	2383	17	1200	1	0	0	logfile
✔	8C83	16470	2024-07-28	2023-01-18	3.0	3.59	3.11	3.0	0.005	0.98	0.0	0.05	23.13	0.01	2.217	4.85	0.68	6.1	93.9	0.0	-2.10	0.88	0.84	2.11	3.0	0.004	0.76	2.0	0.04	22.73	0.00	1.945	12.70	2.51	6.1	93.8	0.0	-0.17	0.42	0.89	0.86	2.11	45803	2725	18	1177	0	0	0	logfile
✔	5AN9	3145	2024-07-27	2015-09-06	3.3	3.29	—	3.3	0.007	1.22	5.0	0.10	23.20	0.01	1.192	3.54	2.32	9.1	88.0	2.9	-3.68	0.38	0.81	1.98	3.3	0.005	0.75	0.0	0.04	23.17	0.01	2.033	12.82	5.20	10.4	89.1	0.5	-2.65	0.71	0.39	0.80	1.10	39693	1905	11	1162	0	0	0	logfile
✔	5ANC	3147	2024-07-28	2015-09-06	4.2	4.23	—	4.2	0.008	1.35	7.0	0.10	23.79	0.01	1.236	6.62	4.21	13.6	82.7	3.6	-4.33	0.41	0.74	—	4.2	0.005	0.88	0.0	0.04	22.59	0.01	2.019	22.27	0.00	13.7	85.3	0.9	-3.79	1.57	0.39	0.70	—	46807	2801	11	1162	0	0	0	logfile
✔	7BGD	12178	2024-07-26	2021-01-06	3.2	3.27	—	3.2	0.008	1.30	0.0	0.06	23.45	0.01	2.327	3.64	2.16	8.0	91.7	0.3	-5.26	0.85	0.83	2.87	3.2	0.005	0.62	0.0	0.04	23.05	0.00	2.013	13.21	4.98	8.0	91.9	0.1	-1.41	1.28	0.88	0.87	2.26	35364	1410	14	1128	0	0	0	logfile
✔	6WUB	21909	2024-07-26	2020-05-04	3.2	2.63	—	2.9	0.009	0.97	0.0	0.05	23.66	0.01	2.029	6.59	18.19	13.4	86.2	0.4	-4.06	0.71	0.84	2.48	2.9	0.005	0.69	0.0	0.04	22.96	0.01	2.052	5.63	10.27	8.6	91.2	0.2	-1.51	0.43	0.72	0.86	2.01	33949	1253	12	1121	0	0	0	logfile
✘	7WTM	32791	2024-07-28	2022-02-05	3.5	3.32	—	3.2	0.006	0.89	0.0	0.05	21.84	0.01	2.110	6.36	0.00	7.6	92.4	0.1	-1.86	0.80	0.78	2.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	44623	2651	18	1106	1	0	0	logfile
✔	8K0Q	36777	2024-07-23	2023-07-10	3.14	3.28	3.12	3.2	0.008	1.01	0.0	0.06	25.11	0.01	1.792	9.81	0.00	0.0	0.0	0.0	—	0.72	0.73	—	3.2	0.006	0.70	0.0	0.04	24.61	0.01	1.732	12.74	0.00	0.0	0.0	0.0	—	0.81	0.74	0.75	—	23586	0	6	1100	4	0	0	logfile
✔	8K0R	36778	2024-07-23	2023-07-10	2.65	2.96	2.86	2.8	0.010	1.30	0.0	0.07	25.03	0.01	1.812	14.80	0.00	0.0	0.0	0.0	—	0.65	0.67	—	2.7	0.006	0.91	0.0	0.05	25.89	0.01	1.731	19.89	0.00	0.0	0.0	0.0	—	0.91	0.69	0.74	—	23506	0	6	1096	2	0	0	logfile

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