Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JSH	22454	2024-04-06	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.005	1.30	0.0	0.05	13.69	0.01	1.942	27.17	0.00	31.8	67.9	0.3	-5.48	6.11	0.73	0.61	—	7916	1904	8	15	0	0	0	logfile
✔	5G2Y	3332	2024-04-08	2016-04-16	4.5	4.38	—	3.8	0.001	0.22	0.0	0.01	22.50	0.00	2.269	2.32	0.00	0.0	0.0	0.0	—	0.58	0.28	—	3.7	0.007	1.01	0.0	0.05	28.52	0.01	1.951	72.85	0.00	0.0	0.0	0.0	—	2.98	0.89	0.78	—	13494	0	1	630	0	0	0	logfile
✔	7RX5	24725	2024-04-06	2021-08-21	3.4	3.65	—	3.6	0.002	0.25	0.0	0.03	11.98	0.00	2.288	5.05	0.00	0.0	100.0	0.0	4.54	0.70	0.85	3.58	3.6	0.002	0.33	0.0	0.03	13.43	0.00	2.264	5.87	0.00	0.0	100.0	0.0	5.24	0.23	0.71	0.87	2.92	9120	1160	40	0	0	0	0	logfile
✔	8PHP	17670	2024-04-16	2023-06-20	2.56	2.99	2.40	2.8	0.001	0.32	0.0	0.04	12.91	0.00	2.357	1.69	0.00	1.5	98.5	0.0	1.55	0.77	0.89	3.59	2.8	0.003	0.56	0.0	0.04	15.67	0.00	2.173	6.09	1.71	2.0	98.0	0.0	1.80	1.35	0.76	0.91	3.20	40812	4968	24	0	0	0	0	logfile
✔	8CWY	27031	2024-04-17	2022-05-19	3.34	3.58	3.35	3.6	0.002	0.32	0.0	0.03	8.10	0.00	2.026	6.16	0.02	0.8	99.2	0.0	5.71	0.53	0.63	1.88	3.6	0.003	0.42	0.0	0.03	11.83	0.00	2.268	6.08	0.91	0.6	99.4	0.0	6.58	1.16	0.56	0.74	1.33	43620	6300	24	0	0	0	0	logfile
✔	5G2X	3331	2024-04-10	2016-04-16	3.8	3.49	—	3.4	0.001	0.32	0.0	0.02	21.03	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.007	1.02	0.0	0.05	25.19	0.01	1.900	45.40	4.54	22.7	76.1	1.3	-5.20	2.37	0.80	0.67	0.25	19072	487	3	704	0	0	0	logfile
✔	7RZT	24777	2024-04-05	2021-08-27	2.35	2.27	—	2.1	0.005	0.32	0.0	0.03	14.89	0.00	2.388	3.83	0.00	2.9	97.1	0.0	2.81	0.77	0.79	2.62	2.0	0.003	0.32	0.0	0.03	15.53	0.00	2.337	5.44	0.35	0.0	100.0	0.0	6.28	0.23	0.80	0.83	2.93	2451	324	6	0	0	0	0	logfile
✔	7KoD	22972	2024-04-09	2020-11-08	1.655	2.30	—	1.9	0.001	0.33	0.0	0.03	8.49	0.00	2.288	0.80	0.00	1.1	98.9	0.0	6.14	0.91	0.91	8.16	2.0	0.005	0.50	0.0	0.04	13.83	0.00	1.855	2.71	0.25	0.6	99.4	0.0	5.20	0.58	0.87	0.93	8.06	68186	4128	48	0	0	1727	32643	logfile
✔	8CZi	27098	2024-04-05	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.003	0.38	0.0	0.03	15.19	0.00	2.148	5.65	1.35	0.0	100.0	0.0	5.64	0.85	0.82	0.84	1.98	2550	339	6	0	0	0	0	logfile
✔	7o5H	12736	2024-04-15	2021-04-08	3.1	2.93	3.04	2.8	0.002	0.33	0.0	0.03	21.63	0.00	1.262	5.88	0.98	2.1	97.9	0.0	1.09	0.86	0.83	1.84	2.8	0.006	0.67	0.0	0.04	22.33	0.01	1.076	13.62	3.21	3.9	96.1	0.0	0.32	1.48	0.87	0.85	1.45	34436	1730	22	964	167	0	0	logfile
✔	7ZiR	14738	2024-04-05	2022-04-08	2.5	2.51	2.04	2.7	0.002	0.34	0.0	0.03	9.02	0.00	2.317	1.65	0.00	2.0	98.0	0.0	-3.82	0.48	0.90	7.46	2.7	0.003	0.46	0.0	0.04	12.13	0.00	2.312	0.55	0.00	3.7	96.3	0.0	-3.81	1.03	0.51	0.93	7.87	2120	255	10	0	0	50	0	logfile
✔	7R9U	24331	2024-04-06	2021-06-29	4.4	5.41	—	4.3	0.002	0.34	0.0	0.04	4.36	0.00	2.248	3.50	0.00	9.1	90.3	0.6	-4.49	0.78	0.62	—	4.3	0.003	0.52	0.0	0.04	8.28	0.00	1.920	9.32	0.00	3.4	96.6	0.0	0.39	2.36	0.91	0.84	—	7727	505	1	0	0	0	3939	logfile
✔	8FEL	29032	2024-04-07	2022-12-06	4.64	5.02	4.40	4.5	0.001	0.35	0.0	0.04	14.88	0.00	2.191	6.97	1.98	3.8	96.2	0.0	-0.24	0.70	0.37	—	4.2	0.002	0.54	0.0	0.04	13.03	0.00	2.273	10.05	0.00	4.6	95.4	0.0	-0.37	1.69	0.73	0.44	—	9201	1191	3	0	0	0	0	logfile
✔	7RZV	24779	2024-04-05	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.36	0.0	0.03	16.04	0.00	2.237	5.05	1.35	0.0	100.0	0.0	5.77	0.88	0.83	0.83	1.74	2562	339	6	0	0	0	0	logfile
✔	7R9K	24328	2024-04-06	2021-06-29	4.1	4.93	—	4.0	0.002	0.35	0.0	0.04	4.65	0.00	2.223	3.24	0.00	10.3	89.1	0.6	-4.05	0.83	0.71	—	4.1	0.002	0.53	0.0	0.04	8.08	0.00	1.906	9.97	0.00	4.4	95.6	0.0	0.09	2.08	0.89	0.83	—	7726	505	1	0	0	0	3938	logfile
✔	8C91	16498	2024-04-06	2023-01-21	4.19	4.74	4.70	4.2	0.001	0.36	0.0	0.03	22.46	0.00	1.896	5.51	0.07	3.8	96.1	0.2	0.39	0.84	0.79	—	4.2	0.005	0.71	0.0	0.04	24.09	0.01	1.946	33.40	0.00	10.5	89.4	0.1	-2.06	0.97	0.86	0.85	—	59110	1860	18	2077	0	0	0	logfile
✔	6X32	22015	2024-04-07	2020-05-21	3.8	3.75	—	3.9	0.001	0.36	0.0	0.03	7.99	0.00	2.266	3.27	0.00	1.4	98.6	0.0	-3.72	0.56	0.69	2.26	3.8	0.003	0.62	0.0	0.04	13.13	0.00	2.125	8.65	2.35	2.9	97.1	0.0	0.59	1.67	0.60	0.73	1.88	114280	14744	16	0	1416	0	0	logfile
✔	7MVU	24056	2024-04-12	2021-05-15	3.77	4.87	3.73	4.0	0.002	0.36	0.0	0.03	6.38	0.00	2.187	3.55	0.00	1.1	98.9	0.0	-0.33	0.85	0.73	0.19	4.0	0.002	0.57	0.0	0.03	11.84	0.00	1.921	10.41	1.36	2.7	97.3	0.0	2.74	2.05	0.88	0.82	0.36	25645	1604	2	0	0	0	12841	logfile
✔	6XLG	22243	2024-04-08	2020-06-28	2.71	2.81	—	2.8	0.001	0.36	0.0	0.04	10.47	0.00	2.105	5.84	0.00	1.3	98.7	0.0	-3.01	0.73	0.81	4.05	2.8	0.003	0.55	0.0	0.04	16.60	0.00	1.963	9.23	2.52	2.0	98.0	0.0	-0.31	3.19	0.78	0.89	3.97	12258	1504	6	0	6	0	0	logfile
✔	7Fii	31598	2024-04-07	2021-07-31	4.3	4.37	—	4.1	0.002	0.36	0.0	0.04	8.97	0.00	2.073	1.66	0.00	0.9	99.1	0.0	3.08	0.64	0.69	—	4.1	0.003	0.61	0.0	0.04	9.62	0.00	2.261	5.54	0.00	3.8	96.2	0.0	0.54	0.75	0.66	0.75	—	8765	1522	6	0	0	0	0	logfile

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