Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	1oED	1044	2024-04-05	2003-03-24	4.0	3.94	—	10.4	0.014	2.29	3.0	0.10	17.23	0.01	1.183	224.94	19.76	5.2	92.7	2.1	-3.67	0.39	0.18	—	9.0	0.005	1.06	0.0	0.05	16.10	0.01	2.206	23.77	2.08	2.6	97.4	0.0	1.81	2.72	0.59	0.38	—	4926	636	5	0	0	0	0	logfile
✔	3iZK	5247	2024-04-06	2010-10-29	4.9	4.48	—	7.1	0.014	1.48	16.0	0.08	12.45	0.02	2.461	2.38	0.77	2.0	97.5	0.4	-1.62	0.65	0.48	—	6.9	0.003	0.76	0.0	0.05	13.33	0.00	2.167	26.82	0.00	4.3	95.7	0.0	-0.87	2.00	0.75	0.57	—	58448	7856	16	0	0	0	0	logfile
✔	3J03	5138	2024-04-06	2011-02-10	4.8	4.09	—	6.5	0.014	1.51	16.0	0.08	13.07	0.02	2.471	3.31	1.78	3.5	96.3	0.2	-1.89	0.66	0.44	—	5.6	0.003	0.78	0.0	0.04	13.62	0.00	2.191	20.58	0.00	2.9	97.1	0.0	-0.06	2.41	0.84	0.70	—	58640	7856	16	0	0	0	0	logfile
✔	3J06	5185	2024-04-07	2011-04-26	3.3	2.88	—	3.5	0.011	2.34	441.0	0.15	21.60	0.01	1.607	79.64	14.71	21.1	65.4	13.5	-7.24	0.56	0.80	1.90	3.2	0.005	0.99	6.0	0.05	21.31	0.01	1.530	17.41	7.20	8.1	90.0	1.9	-2.56	1.23	0.56	0.79	1.87	62916	7595	98	147	0	0	0	logfile
✔	3J1B	5391	2024-04-07	2012-02-06	4.9	5.01	—	4.8	0.034	3.60	502.0	0.21	17.58	0.03	2.352	1.73	4.08	6.4	90.1	3.5	-3.28	0.67	0.51	—	4.8	0.003	0.78	0.0	0.04	15.02	0.01	2.166	12.44	0.00	5.0	94.4	0.6	0.88	2.24	0.78	0.68	—	62992	8304	16	0	0	0	0	logfile
✔	3J2P	5499	2024-04-07	2012-11-30	3.6	3.28	—	3.4	0.010	1.92	0.0	0.12	17.50	0.02	2.155	110.32	20.13	29.7	46.3	24.1	-7.75	0.42	0.79	1.08	3.3	0.004	0.91	0.0	0.04	18.21	0.00	1.845	75.71	11.64	20.8	75.4	3.8	-4.38	0.84	0.39	0.73	1.07	9890	1134	8	0	6	0	1086	logfile
✔	3J5P	5778	2024-04-10	2013-10-28	3.275	3.63	3.36	3.4	0.011	1.53	0.0	0.09	21.59	0.01	1.156	79.06	27.79	5.7	94.3	0.0	-0.42	0.62	0.55	0.56	3.5	0.003	0.88	0.0	0.04	17.31	0.00	2.089	16.51	3.70	5.3	94.5	0.2	0.59	1.17	0.73	0.79	0.66	18636	2324	4	0	44	0	0	logfile
✔	3J5R	5777	2024-04-09	2013-10-28	4.2	4.88	—	7.2	0.011	1.57	0.0	0.09	20.25	0.01	1.204	84.36	28.64	7.8	91.0	1.2	-0.91	0.58	0.45	—	7.3	0.003	0.88	0.0	0.04	12.93	0.00	2.069	21.65	0.00	7.1	92.4	0.4	-0.07	1.80	0.67	0.52	—	17564	2324	4	0	44	0	0	logfile
✔	3J63	5830	2024-04-07	2013-12-05	3.8	3.96	—	3.9	0.005	1.25	0.0	0.07	17.40	0.00	2.184	54.83	7.31	10.3	86.7	3.1	-4.14	0.71	0.65	1.05	3.9	0.004	1.00	0.0	0.04	19.21	0.00	2.205	15.46	8.22	1.3	98.7	0.0	-0.47	1.91	0.79	0.76	1.14	10590	1365	15	0	0	0	0	logfile
✔	3J6E	5895	2024-04-07	2014-02-18	4.7	4.79	—	4.7	0.021	2.60	18.0	0.13	13.52	0.01	1.539	5.62	0.28	3.4	96.2	0.4	-0.68	0.62	0.66	—	4.7	0.003	0.71	0.0	0.04	14.75	0.00	1.891	18.96	0.03	2.9	97.1	0.0	0.48	2.15	0.69	0.80	—	60984	7686	54	0	36	72	0	logfile
✔	3J6F	5896	2024-04-07	2014-02-19	4.9	4.97	—	4.9	0.021	2.64	64.0	0.14	14.01	0.01	2.069	5.57	0.14	3.1	96.3	0.6	-1.05	0.62	0.66	—	4.9	0.003	0.74	0.0	0.05	14.46	0.01	1.824	20.72	0.08	2.9	97.1	0.0	0.29	2.80	0.69	0.81	—	60903	7686	45	9	18	36	0	logfile
✔	3J6J	5925	2024-04-08	2014-03-13	3.64	4.17	—	3.9	0.007	1.41	0.0	0.06	15.90	0.00	1.578	33.23	6.10	4.1	95.0	0.9	-1.46	0.86	0.83	1.23	3.9	0.004	0.94	0.0	0.05	17.87	0.01	2.117	21.22	5.09	3.2	96.6	0.3	0.50	2.82	0.88	0.88	1.90	6344	776	8	0	0	0	0	logfile
✔	3J6Q	5926	2024-04-17	2014-03-20	3.8	4.07	—	4.1	0.010	1.16	0.0	0.06	10.65	0.01	1.279	19.23	0.64	11.7	84.1	4.2	-4.60	0.46	0.59	1.31	4.0	0.004	0.87	0.0	0.05	15.36	0.01	2.054	11.61	3.76	11.3	88.1	0.6	-2.84	2.91	0.55	0.75	1.58	42575	5300	10	0	0	0	0	logfile
✔	3J79	2660	2024-04-09	2014-06-02	3.2	3.25	3.13	3.2	0.007	1.31	43.0	0.10	24.55	0.01	1.505	4.40	11.66	7.2	90.4	2.4	-1.45	0.53	0.71	0.94	3.2	0.006	0.72	0.0	0.04	23.18	0.01	1.817	13.55	6.22	6.2	93.3	0.5	-0.49	0.94	0.65	0.86	1.83	124514	6244	55	3460	168	0	0	logfile
✔	3J7A	2660	2024-04-09	2014-06-03	3.2	3.24	3.33	3.2	0.008	1.39	49.0	0.10	24.28	0.01	1.715	4.56	15.41	10.5	85.4	4.2	-2.49	0.31	0.55	-0.02	3.2	0.005	0.77	0.0	0.04	23.17	0.01	1.822	18.07	6.12	9.2	89.6	1.2	-2.23	2.69	0.40	0.78	0.95	68866	4106	35	1682	69	0	0	logfile
✔	3J7H	5995	2024-04-14	2014-06-30	3.2	2.58	3.45	3.4	0.005	1.17	0.0	0.06	17.98	0.01	1.085	132.80	12.24	2.5	97.4	0.2	2.39	0.77	0.79	2.04	3.4	0.005	0.76	0.0	0.04	17.51	0.00	2.008	14.58	5.58	3.8	96.2	0.0	-0.11	1.64	0.79	0.87	2.57	32828	4088	8	0	4	0	0	logfile
✔	3J7Y	2762	2024-04-14	2014-08-26	3.4	3.45	—	3.4	0.008	1.34	31.0	0.10	23.07	0.01	1.708	8.61	8.93	7.9	89.9	2.2	-1.78	0.72	0.83	2.09	3.4	0.004	0.75	1.0	0.04	22.01	0.01	1.816	11.97	4.58	6.7	92.6	0.7	-0.26	2.04	0.74	0.85	1.95	94121	7469	56	1530	208	0	0	logfile
✔	3J7Z	6057	2024-04-13	2014-08-27	3.9	3.80	—	3.9	0.009	1.42	5.0	0.10	23.57	0.01	1.426	11.65	10.91	16.3	77.2	6.5	-5.00	0.75	0.70	0.71	3.8	0.005	0.77	1.0	0.04	23.13	0.01	1.856	14.47	6.24	12.3	85.8	1.9	-2.83	1.84	0.78	0.79	0.91	90700	3453	36	2975	1	0	0	logfile
✔	3J80	2764	2024-04-11	2014-08-28	3.75	3.87	3.84	3.8	0.007	1.36	43.0	0.11	26.05	0.01	1.747	9.35	13.53	12.2	83.2	4.6	-2.33	0.79	0.86	0.90	3.7	0.004	0.77	0.0	0.04	24.75	0.01	1.793	20.61	7.27	11.4	87.2	1.4	-1.71	1.59	0.78	0.82	0.65	77716	5039	41	1779	70	0	0	logfile
✔	3J81	2763	2024-04-12	2014-08-29	4.0	4.19	—	4.0	0.007	1.30	64.0	0.10	25.85	0.01	1.076	7.72	12.47	11.6	83.5	4.9	-2.31	0.79	0.84	—	4.0	0.005	0.85	3.0	0.04	25.03	0.01	1.864	24.43	5.64	10.9	87.5	1.5	-1.84	2.06	0.79	0.82	—	83760	5686	48	1876	84	0	0	logfile

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