Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6FU8	4319	2024-04-05	2018-02-26	3.2	4.43	2.98	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.0	0.004	0.81	0.0	0.04	15.68	0.00	2.242	15.40	2.78	11.2	87.5	1.2	-1.93	3.97	0.23	0.60	-0.89	1364	82	1	0	0	0	711	logfile
✔	7V66	31736	2024-04-15	2021-08-19	1.89	1.85	—	5.2	0.006	1.02	0.0	0.07	12.14	0.01	1.929	1.89	2.07	1.9	98.0	0.0	1.97	0.09	0.05	1.38	4.1	0.006	1.44	8.0	0.04	15.60	0.01	2.233	16.30	1.64	4.1	95.9	0.0	3.25	1.24	0.14	0.12	-0.77	33216	4128	24	0	0	0	0	logfile
✔	7Q4W	13819	2024-04-10	2021-11-02	3.78	5.84	—	4.5	0.005	0.84	0.0	0.05	13.85	0.01	2.186	8.26	0.52	3.1	96.8	0.0	-0.36	0.83	0.65	-0.36	4.5	0.006	0.83	0.0	0.05	15.45	0.00	2.105	29.90	2.17	5.9	94.1	0.0	-0.67	1.30	0.92	0.85	-0.70	18050	2364	12	0	22	0	0	logfile
✔	7ZPK	14856	2024-04-12	2022-04-27	3.81	7.29	3.88	5.6	0.004	0.81	0.0	0.05	15.30	0.02	2.214	2.12	0.68	2.8	97.2	0.0	0.04	0.81	0.55	-0.44	4.0	0.003	0.67	0.0	0.04	17.36	0.00	1.910	21.18	2.63	5.7	94.3	0.0	0.37	2.36	0.86	0.72	-0.64	25935	1513	3	55	0	0	12760	logfile
✔	8ERL	28554	2024-04-06	2022-10-12	3.9	4.58	3.40	4.1	0.005	1.28	0.0	0.07	15.42	0.01	2.296	4.84	0.27	9.5	90.5	0.0	-3.82	0.86	0.76	-0.02	4.1	0.003	0.73	0.0	0.04	15.84	0.00	2.113	23.33	3.43	8.8	91.2	0.0	-2.32	1.03	0.87	0.79	-0.33	6600	830	2	0	0	0	0	logfile
✔	8EFP	28087	2024-04-05	2022-09-08	3.8	4.73	3.90	4.0	0.006	1.46	7.0	0.09	18.61	0.01	1.908	33.65	3.07	13.3	86.7	0.0	-4.26	0.82	0.62	-0.42	4.0	0.004	0.89	0.0	0.04	18.96	0.00	2.081	25.08	4.02	11.8	88.2	0.0	-2.48	0.89	0.84	0.73	-0.30	4705	594	2	0	0	0	0	logfile
✔	8T23	40979	2024-04-06	2023-06-05	3.87	4.12	4.24	7.5	0.005	1.00	0.0	0.05	19.22	0.01	2.136	16.85	0.59	11.9	88.1	0.0	-3.06	0.59	0.48	0.19	7.3	0.003	0.82	0.0	0.05	18.12	0.01	2.123	17.32	3.81	11.5	88.5	0.0	-2.57	1.42	0.62	0.55	-0.26	6451	781	6	0	6	0	0	logfile
✔	7LC9	23270	2024-04-05	2021-01-10	3.2	3.25	—	3.1	0.004	0.72	0.0	0.05	17.46	0.00	1.884	31.60	18.58	13.4	86.6	0.0	-4.15	0.71	0.77	-0.84	3.1	0.004	0.68	0.0	0.05	17.25	0.00	2.139	28.50	10.32	11.2	88.8	0.0	-3.62	0.66	0.69	0.79	-0.22	3497	525	12	0	0	0	0	logfile
✔	7UiC	26543	2024-04-09	2022-03-29	3.7	6.93	3.66	3.1	0.002	0.51	0.0	0.04	13.62	0.00	2.212	9.81	0.00	1.0	99.0	0.0	0.41	0.74	0.59	0.28	3.0	0.002	0.67	0.0	0.04	14.92	0.00	2.124	11.92	0.96	1.9	98.0	0.0	0.89	0.61	0.81	0.71	-0.21	17303	2138	6	0	0	0	0	logfile
✔	7TTS	26122	2024-04-10	2022-02-01	2.9	12.34	—	—	0.008	0.99	1.0	0.08	12.97	0.01	1.788	5.64	0.30	3.2	96.6	0.1	1.89	0.77	0.55	-0.20	—	0.003	0.60	0.0	0.04	13.75	0.00	1.912	17.34	0.43	3.4	96.5	0.1	2.16	0.99	0.71	0.43	-0.20	18793	2686	12	0	23	0	0	logfile
✔	8B3Q	15833	2024-04-12	2022-09-16	2.58	3.69	2.62	3.2	0.011	1.55	0.0	0.09	14.85	0.01	2.348	13.83	0.20	0.0	100.0	0.0	-1.09	0.83	0.94	3.67	3.3	0.003	0.55	0.0	0.03	17.44	0.00	2.219	4.82	2.59	0.2	99.8	0.0	6.35	2.57	0.77	0.88	-0.19	25095	3395	75	0	0	0	0	logfile
✔	7YPi	34001	2024-04-15	2022-08-03	3.8	4.97	3.95	3.9	0.007	1.26	2.0	0.07	13.34	0.01	1.737	14.24	0.13	6.9	93.1	0.0	-2.94	0.80	0.59	-0.05	3.9	0.005	0.85	1.0	0.05	15.19	0.01	1.539	33.67	2.59	8.1	91.9	0.0	-1.63	1.31	0.82	0.64	-0.17	36476	4638	8	0	2	0	0	logfile
✔	7VZF	32227	2024-04-05	2021-11-16	2.95	2.71	—	3.0	0.009	1.06	0.0	0.06	16.23	0.01	1.971	38.45	0.00	26.5	73.5	0.0	-5.56	0.30	0.43	-0.13	2.8	0.004	0.92	0.0	0.05	18.65	0.00	2.097	12.69	6.03	18.5	81.5	0.0	-4.26	1.85	0.37	0.63	-0.15	2628	363	3	0	0	0	0	logfile
✔	8W4P	37268	2024-04-05	2023-08-24	3.48	4.23	3.79	3.6	0.017	2.89	0.0	0.17	23.39	0.01	2.306	9.89	0.00	15.3	83.9	0.8	-3.29	0.42	0.75	1.40	3.6	0.006	1.16	0.0	0.09	18.42	0.00	2.192	10.82	4.80	13.7	86.1	0.3	-0.47	1.23	0.43	0.79	-0.13	4531	377	6	0	191	0	0	logfile
✔	6CXC	7774	2024-04-09	2018-04-02	3.9	4.14	—	4.0	0.006	1.03	0.0	0.06	11.60	0.01	2.198	9.05	0.29	6.2	93.8	0.0	-4.06	0.71	0.71	0.12	4.0	0.004	0.81	0.0	0.05	15.93	0.00	2.076	23.13	3.74	7.2	92.8	0.0	-2.20	2.13	0.72	0.75	-0.11	15196	1945	18	0	6	0	0	logfile
✔	8E55	27903	2024-04-08	2022-08-19	3.85	4.07	3.34	4.0	0.007	0.67	0.0	0.03	12.36	0.00	2.252	3.39	0.50	2.5	97.5	0.0	1.17	0.66	0.60	-0.11	4.0	0.003	0.57	0.0	0.03	16.27	0.00	2.251	11.21	1.85	1.6	98.4	0.0	4.07	1.44	0.69	0.71	-0.11	12176	780	4	0	0	0	6104	logfile
✔	7RTV	24690	2024-04-05	2021-08-15	3.96	4.06	—	4.1	0.004	0.76	0.0	0.05	24.99	0.00	2.207	14.04	0.32	2.8	97.2	0.0	3.61	0.41	0.63	0.10	4.1	0.003	0.92	0.0	0.05	17.35	0.00	2.201	16.81	5.19	2.8	97.2	0.0	3.26	0.50	0.42	0.64	-0.08	2881	366	3	0	6	0	0	logfile
✔	7PQG	13593	2024-04-05	2021-09-21	3.7	4.20	—	4.0	0.004	0.88	0.0	0.05	12.56	0.01	2.204	28.36	0.28	7.4	92.6	0.0	-0.87	0.56	0.76	0.82	4.0	0.004	1.04	0.0	0.06	15.86	0.00	2.132	35.30	3.36	7.6	92.4	0.0	-0.93	0.68	0.56	0.77	-0.07	3251	423	2	0	0	0	0	logfile
✔	8A1R	15084	2024-04-07	2022-06-01	3.6	5.63	3.62	3.4	0.011	0.86	0.0	0.06	16.56	0.00	2.097	11.72	0.00	5.2	94.8	0.0	-0.06	0.91	0.75	-0.28	3.5	0.003	0.69	0.0	0.05	16.41	0.00	2.166	19.75	1.12	6.4	93.6	0.0	-0.56	0.61	0.95	0.86	-0.05	9286	1186	4	0	4	0	0	logfile
✔	7oCK	12809	2024-04-13	2021-04-27	3.6	5.02	—	8.3	0.008	0.86	0.0	0.05	14.98	0.01	1.988	36.10	0.20	7.7	92.1	0.2	-2.93	0.80	0.41	-0.16	5.6	0.006	1.01	1.0	0.05	17.05	0.01	1.953	42.81	3.20	6.6	93.3	0.1	-1.45	1.41	0.87	0.65	-0.05	28276	3666	12	0	0	0	0	logfile

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