Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7DFW	30666	2024-04-06	2020-11-10	2.69	2.93	—	3.0	0.006	0.97	0.0	0.06	15.98	0.02	2.180	10.08	0.00	4.8	95.2	0.0	-3.11	0.66	0.83	2.81	3.0	0.004	0.65	0.0	0.04	15.39	0.00	2.214	4.63	1.72	4.9	95.1	0.0	0.14	0.33	0.67	0.86	2.32	7913	957	5	0	23	0	0	logfile
✔	8F4B	28854	2024-04-07	2022-11-10	3.27	3.47	3.40	3.5	0.014	1.82	0.0	0.09	12.70	0.00	2.278	1.25	0.10	5.0	95.0	0.0	-2.97	0.50	0.68	1.95	3.5	0.003	0.56	0.0	0.04	15.33	0.00	2.202	5.58	2.20	2.4	97.6	0.0	0.59	1.23	0.63	0.81	1.48	9487	1198	2	0	2	0	0	logfile
✔	7LCN	23277	2024-04-08	2021-01-11	3.35	3.96	—	3.5	0.014	1.95	26.0	0.12	13.95	0.02	2.509	0.43	2.55	9.4	89.0	1.6	-2.18	0.83	0.73	2.09	3.6	0.003	0.64	0.0	0.04	14.03	0.00	1.840	8.14	1.47	7.9	91.8	0.3	-1.47	0.68	0.84	0.75	1.83	66313	4296	27	0	63	0	32245	logfile
✔	7T8X	25748	2024-04-08	2021-12-17	3.21	3.47	—	3.5	0.004	0.72	0.0	0.05	12.83	0.00	2.063	7.65	0.00	3.8	96.2	0.0	0.02	0.69	0.83	3.18	3.5	0.003	0.62	0.0	0.04	14.70	0.00	2.110	7.18	2.12	3.8	96.2	0.0	0.21	0.35	0.71	0.87	2.66	8555	1126	6	0	1	0	0	logfile
✔	7L2X	23144	2024-04-09	2020-12-17	3.26	3.52	3.19	3.5	0.010	1.06	0.0	0.05	13.94	0.01	2.179	2.62	0.79	5.0	94.9	0.0	0.61	0.64	0.85	2.75	3.5	0.004	0.76	1.0	0.04	15.54	0.00	2.135	8.13	2.16	4.7	95.3	0.0	0.97	1.39	0.65	0.87	1.73	17745	2144	8	0	9	0	0	logfile
✔	7URF	26711	2024-04-05	2022-04-21	2.8	2.78	2.80	2.9	0.009	0.78	0.0	1.24	38.42	0.00	2.148	5.35	0.00	3.1	96.9	0.0	-0.96	0.62	0.88	3.48	2.9	0.003	1.89	0.0	0.19	28.73	0.00	2.173	5.68	2.73	3.4	96.6	0.0	1.90	1.74	0.63	0.89	2.97	6133	722	5	0	8	0	0	logfile
✔	8ASD	15614	2024-04-09	2022-08-19	2.6	2.22	2.62	2.4	0.006	0.65	0.0	0.04	15.15	0.01	2.030	3.99	0.06	3.6	96.4	0.0	-0.27	0.64	0.84	4.06	2.4	0.002	0.49	0.0	0.04	17.04	0.00	1.951	5.27	0.81	3.4	96.6	0.0	0.68	0.29	0.65	0.86	3.79	15531	1826	9	44	4	32	0	logfile
✔	7V2o	31658	2024-04-05	2021-08-09	3.5	3.22	3.31	3.0	0.008	1.12	2.0	0.10	23.97	0.00	2.203	6.79	0.18	5.3	94.5	0.2	-0.53	0.81	0.84	2.00	3.0	0.007	0.71	0.0	0.04	23.82	0.01	2.071	11.25	2.41	6.9	93.1	0.1	-0.28	0.36	0.80	0.83	1.94	53005	2624	24	1487	2	0	0	logfile
✔	6PWF	20507	2024-04-09	2019-07-22	4.07	4.13	—	4.1	0.009	1.01	0.0	0.06	26.98	0.01	2.066	6.15	0.11	9.8	90.2	0.0	-6.10	0.64	0.76	—	4.1	0.004	0.66	0.0	0.04	26.90	0.00	2.060	11.29	0.00	6.9	93.1	0.0	-2.60	1.13	0.64	0.76	—	15197	1208	11	292	0	0	0	logfile
✔	7CGE	30355	2024-04-09	2020-07-01	2.9	3.03	—	3.0	0.011	1.49	0.0	0.06	20.89	0.01	2.198	4.85	0.95	11.2	88.2	0.6	-5.74	0.77	0.86	2.99	3.0	0.003	0.87	1.0	0.04	17.98	0.00	2.018	6.79	2.43	9.4	90.5	0.1	-0.45	0.56	0.78	0.88	2.20	16406	2092	16	0	12	0	0	logfile
✔	7YNC	33958	2024-04-08	2022-07-30	3.14	3.40	3.24	3.4	0.003	0.65	0.0	0.04	18.05	0.01	2.130	6.93	1.04	10.6	89.4	0.1	-4.51	0.77	0.84	2.55	3.4	0.003	0.64	0.0	0.04	18.46	0.00	2.136	6.30	2.75	11.5	88.5	0.0	-2.01	1.16	0.78	0.87	2.40	13848	1536	3	66	0	0	0	logfile
✔	7U2M	26315	2024-04-08	2022-02-24	2.9	3.22	—	3.3	0.008	0.88	0.0	0.05	13.14	0.00	2.059	29.73	0.00	5.3	94.7	0.0	-3.83	0.57	0.86	5.01	3.1	0.003	0.77	0.0	0.05	15.49	0.00	2.184	11.06	4.85	3.7	96.3	0.0	-0.42	1.18	0.54	0.85	3.57	14155	1730	15	0	20	0	0	logfile
✔	6UiV	20788	2024-04-11	2019-10-01	3.3	4.06	—	3.6	0.007	0.89	0.0	0.06	13.35	0.01	2.218	7.15	1.13	4.6	95.4	0.0	-3.51	0.69	0.81	2.55	3.6	0.003	0.58	0.0	0.04	14.69	0.00	2.224	8.84	3.44	3.4	96.6	0.0	2.89	0.58	0.70	0.82	1.94	22902	3157	11	0	0	0	0	logfile
✔	6PWE	20506	2024-04-07	2019-07-22	3.95	4.04	—	4.0	0.010	0.93	0.0	0.05	27.12	0.01	2.264	5.38	0.00	7.4	92.3	0.3	-6.65	0.70	0.80	2.98	4.0	0.005	0.66	0.0	0.04	28.08	0.00	2.063	12.36	3.40	4.9	94.9	0.1	-1.46	1.42	0.70	0.81	1.51	11923	744	10	294	0	0	0	logfile
✔	8DUA	27718	2024-04-09	2022-07-27	4.32	5.26	4.35	4.3	0.005	0.79	4.0	0.06	19.51	0.00	1.889	5.05	0.19	5.6	94.2	0.2	-1.65	0.70	0.61	—	4.3	0.003	0.73	0.0	0.05	12.89	0.00	2.057	13.77	0.00	7.2	92.8	0.0	-1.69	2.56	0.80	0.81	—	15612	1815	33	0	87	0	0	logfile
✔	7BV8	30215	2024-04-13	2020-04-09	3.14	3.53	—	3.5	0.007	0.75	0.0	0.04	23.24	0.01	2.007	9.15	0.29	8.3	91.5	0.3	-4.23	0.72	0.82	3.09	3.5	0.007	0.72	0.0	0.04	23.04	0.01	2.027	8.81	4.69	7.3	92.6	0.1	-1.98	1.12	0.72	0.84	2.69	91505	3436	32	3017	0	0	0	logfile
✔	6VSJ	21377	2024-04-13	2020-02-11	3.94	4.47	—	4.3	0.008	1.02	0.0	0.06	15.07	0.01	2.212	9.41	0.95	9.6	90.3	0.1	-4.11	0.83	0.81	1.80	4.3	0.003	0.69	0.0	0.04	16.22	0.00	2.113	15.39	4.19	8.1	91.9	0.0	-2.10	1.61	0.83	0.80	1.48	28752	3687	12	0	12	0	0	logfile
✔	6CRW	7574	2024-04-12	2018-03-19	3.9	4.05	4.21	3.9	0.007	1.00	0.0	0.06	13.47	0.01	1.773	6.75	0.07	5.7	94.3	0.0	-3.45	0.76	0.71	1.27	3.9	0.004	0.72	0.0	0.04	12.81	0.00	2.001	15.83	1.98	7.1	92.9	0.0	-1.64	0.83	0.78	0.74	0.93	25994	3204	27	0	74	0	0	logfile
✔	7MZB	24088	2024-04-09	2021-05-24	3.72	3.89	3.70	3.8	0.011	0.92	0.0	0.14	12.20	0.01	2.029	1.96	0.84	5.9	94.0	0.1	0.55	0.61	0.83	2.22	3.8	0.007	0.85	0.0	0.05	16.35	0.00	2.056	18.57	3.16	7.1	92.8	0.0	0.08	3.14	0.64	0.84	1.44	17607	2145	8	0	5	0	0	logfile
✔	6X9T	22110	2024-04-10	2020-06-03	3.2	3.20	3.24	3.2	0.025	1.71	0.0	0.10	11.43	0.01	2.251	0.83	0.44	3.3	96.4	0.4	0.44	0.76	0.85	4.01	3.2	0.003	0.61	0.0	0.04	13.07	0.00	2.118	4.92	1.52	4.6	95.4	0.0	0.55	0.61	0.74	0.86	3.35	19590	2358	33	0	87	0	0	logfile

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