Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7DA4	30622	2024-04-05	2020-10-14	4.24	3.75	—	4.2	0.010	1.54	0.0	0.08	17.16	0.01	2.245	79.80	0.00	50.0	50.0	0.0	-8.65	0.39	0.66	—	4.3	0.004	0.98	0.0	0.04	11.88	0.00	2.201	17.17	0.00	25.0	75.0	0.0	-5.95	3.06	0.36	0.60	—	507	66	3	0	0	0	0	logfile
✔	7UiU	26553	2024-04-05	2022-03-29	2.8	3.11	2.72	3.1	0.004	0.62	0.0	0.04	13.60	0.00	2.356	3.35	0.00	4.8	95.2	0.0	-2.09	0.28	0.82	1.99	3.3	0.004	0.96	0.0	0.04	16.77	0.00	2.227	11.74	3.33	6.0	94.0	0.0	-2.10	1.37	0.28	0.89	2.72	607	85	1	0	0	0	0	logfile
✔	6TGN	10499	2024-04-05	2019-11-17	3.9	3.83	—	4.0	0.010	1.73	0.0	0.12	11.93	0.01	2.161	5.17	1.39	4.7	95.3	0.0	-3.57	0.54	0.90	1.73	4.0	0.003	0.95	0.0	0.04	15.62	0.00	2.431	12.55	5.56	2.3	97.7	0.0	0.06	0.98	0.52	0.82	0.35	672	88	1	0	0	0	0	logfile
✔	8P34	17383	2024-04-05	2023-05-17	2.61	2.80	2.24	2.8	0.009	1.32	0.0	0.08	11.05	0.01	2.651	0.69	0.00	5.4	94.6	0.0	-1.84	0.29	0.90	7.34	2.8	0.003	0.53	0.0	0.05	13.66	0.00	2.674	0.69	1.23	4.3	95.7	0.0	-1.62	0.28	0.28	0.88	6.38	711	94	1	0	0	0	0	logfile
✔	7KU5	23034	2024-04-05	2020-11-24	3.76	3.63	—	3.9	0.006	1.29	0.0	0.07	14.85	0.01	2.420	3.63	0.00	12.8	87.2	0.0	-5.41	0.23	0.65	-0.48	3.9	0.002	0.76	0.0	0.05	15.78	0.01	2.246	8.71	5.00	12.8	87.2	0.0	-1.24	1.17	0.25	0.69	2.46	750	88	1	0	4	0	0	logfile
✔	5LiJ	4054	2024-04-04	2016-07-14	4.2	3.63	—	4.2	0.009	2.92	4.0	0.17	15.82	0.01	2.249	25.64	0.00	10.7	89.3	0.0	-6.36	0.85	0.76	—	3.8	0.005	1.17	0.0	0.04	10.44	0.00	2.149	15.78	0.00	35.3	64.7	0.0	-5.53	1.48	0.86	0.78	—	761	152	1	0	0	0	0	logfile
✔	8A05	15048	2024-04-05	2022-05-26	3.4	3.47	3.11	3.5	0.002	0.43	0.0	0.05	12.67	0.00	2.328	2.02	0.00	2.2	97.8	0.0	0.42	0.37	0.84	2.71	3.5	0.002	0.46	0.0	0.05	14.84	0.00	2.255	2.02	2.41	2.2	97.8	0.0	0.36	0.20	0.36	0.85	2.71	764	91	2	0	5	0	0	logfile
✔	6QJP	4565	2024-04-05	2019-01-24	3.5	3.64	2.32	4.1	0.009	1.01	0.0	0.07	9.52	0.01	2.605	1.16	0.00	3.2	96.8	0.0	-2.50	0.37	0.74	3.05	4.2	0.003	0.70	0.0	0.05	13.24	0.00	2.357	11.00	2.94	2.2	97.8	0.0	-3.28	1.60	0.32	0.73	3.79	816	105	3	0	0	0	0	logfile
✔	6QJM	4564	2024-04-05	2019-01-24	3.3	3.49	1.95	3.4	0.010	1.01	0.0	0.07	8.06	0.01	2.408	6.17	0.00	9.1	90.9	0.0	-2.36	0.38	0.76	3.31	3.5	0.003	0.60	0.0	0.05	13.63	0.00	2.152	6.17	2.86	7.1	92.9	0.0	-2.38	1.59	0.33	0.73	3.53	846	111	3	0	0	0	0	logfile
✔	8TiF	41286	2024-04-05	2023-07-19	3.89	3.95	3.71	4.1	0.005	0.55	0.0	0.04	17.04	0.00	2.317	8.78	1.02	1.6	98.4	0.0	0.15	0.23	0.85	1.30	4.1	0.002	0.42	0.0	0.04	16.97	0.00	2.337	4.94	2.04	1.6	98.4	0.0	0.98	0.36	0.22	0.85	3.19	889	131	1	0	0	0	0	logfile
✔	8iKS	35520	2024-04-05	2023-03-01	3.75	3.73	3.52	3.2	0.018	4.07	8.0	0.24	18.13	0.00	1.885	50.36	0.00	8.3	91.7	0.0	-5.59	0.34	0.66	1.82	2.9	0.032	2.98	0.0	0.15	23.72	0.01	1.974	104.06	33.33	45.8	52.1	2.1	-6.90	1.67	0.35	0.69	0.93	1024	144	16	0	0	0	0	logfile
✔	5M5H	4155	2024-04-05	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	39.89	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	2.1	0.003	0.85	0.0	0.05	12.37	0.01	2.369	17.88	0.00	7.9	92.1	0.0	-0.80	1.84	0.15	0.14	—	1086	132	1	0	0	0	0	logfile
✔	7US9	26729	2024-04-05	2022-04-23	3.8	3.84	3.64	3.9	0.015	1.58	0.0	0.11	7.49	0.01	2.489	3.45	0.00	2.3	97.7	0.0	1.07	0.59	0.74	4.43	3.8	0.003	0.78	0.0	0.11	11.81	0.01	2.146	5.42	1.23	1.6	98.4	0.0	0.51	1.45	0.60	0.77	2.97	1127	145	3	0	4	0	0	logfile
✔	6XTB	10618	2024-04-05	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.005	1.12	0.0	0.05	9.13	0.00	2.119	10.22	0.00	25.1	74.9	0.0	-5.72	2.48	0.34	0.65	—	1161	235	1	0	0	0	0	logfile
✔	8A06	15051	2024-04-05	2022-05-26	4.0	3.63	3.78	3.8	0.003	0.56	0.0	0.05	13.75	0.00	2.201	6.79	0.73	2.8	97.2	0.0	-0.86	0.27	0.78	—	3.7	0.003	0.61	0.0	0.05	17.11	0.00	2.273	4.67	8.76	4.1	95.9	0.0	-1.52	0.41	0.26	0.79	—	1185	147	1	0	0	0	0	logfile
✔	6VHL	21207	2024-04-05	2020-01-10	3.3	3.60	—	3.5	0.007	1.03	0.0	0.07	15.85	0.01	1.791	14.51	4.48	14.7	85.3	0.0	-6.30	0.26	0.70	3.54	3.6	0.003	0.71	0.0	0.04	16.46	0.00	2.331	5.80	2.99	6.7	93.3	0.0	-3.62	2.72	0.27	0.70	3.42	1190	158	4	0	0	0	0	logfile
✔	7BC5	12139	2024-04-05	2020-12-18	3.1	3.06	3.11	3.1	0.005	1.05	0.0	0.05	15.92	0.01	2.314	7.83	0.76	8.2	91.8	0.0	-5.64	0.23	0.62	0.92	3.0	0.004	0.74	0.0	0.04	17.50	0.00	2.253	17.30	8.40	9.4	90.6	0.0	-3.06	1.28	0.24	0.60	1.31	1200	161	1	0	0	0	0	logfile
✔	6oG3	20051	2024-04-05	2019-04-01	4.1	5.37	—	6.5	0.005	1.53	0.0	0.00	0.93	0.00	2.539	0.00	0.00	0.0	99.2	0.8	0.27	0.46	0.48	—	6.0	0.005	1.11	0.0	0.00	8.01	0.00	2.615	51.00	0.00	13.0	87.0	0.0	-1.64	2.16	0.67	0.87	—	1215	396	4	0	9	0	0	logfile
✔	6QJQ	4566	2024-04-05	2019-01-24	3.7	3.99	2.14	4.1	0.021	1.17	0.0	0.11	13.36	0.01	2.499	5.58	0.00	4.0	94.0	2.0	-4.41	0.39	0.75	2.60	4.1	0.003	0.74	0.0	0.05	14.32	0.00	2.354	7.97	0.00	6.0	94.0	0.0	-2.75	1.23	0.37	0.74	1.67	1218	162	6	0	0	0	0	logfile
✔	7V49	31704	2024-04-05	2021-08-12	3.4	3.45	—	4.1	0.007	1.01	0.0	0.06	13.70	0.00	2.279	22.06	0.00	39.7	60.3	0.0	-7.67	0.33	0.73	5.03	4.1	0.003	0.75	0.0	0.05	14.90	0.00	2.443	8.42	4.88	14.9	85.1	0.0	-5.73	1.14	0.31	0.69	5.16	1221	180	3	0	0	0	0	logfile

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