Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8D9N	27267	2024-04-06	2022-06-10	4.4	4.74	3.88	34.0	0.003	0.60	0.0	0.04	13.21	0.00	2.107	2.77	0.38	5.8	94.2	0.0	-0.81	0.28	-0.07	—	20.0	0.002	0.66	0.0	0.04	13.37	0.00	2.199	4.56	0.00	5.3	94.7	0.0	0.51	0.56	0.36	-0.05	—	7186	902	2	0	0	0	0	logfile
✔	8D43	27173	2024-04-06	2022-06-01	2.88	3.12	2.94	5.9	0.004	0.84	1.0	0.06	19.69	0.01	1.371	8.43	5.48	6.5	93.5	0.0	-1.48	0.17	-0.02	0.37	3.1	0.005	0.96	0.0	0.05	18.05	0.01	2.138	24.30	3.34	9.0	90.8	0.2	-1.78	2.71	0.42	0.37	0.91	7763	962	5	0	6	1	0	logfile
✔	6RJU	4906	2024-04-05	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	3.9	0.003	0.66	0.0	0.03	15.97	0.00	2.278	7.54	1.01	7.0	93.0	0.0	-0.88	1.30	0.30	0.04	1.02	1992	131	1	0	0	0	997	logfile
✔	8J5Y	33733	2024-04-07	2023-04-24	3.07	3.50	3.24	20.0	0.004	0.84	0.0	0.05	13.88	0.01	2.153	12.97	0.00	6.0	93.7	0.3	-1.55	0.08	0.00	0.39	3.4	0.003	0.74	0.0	0.04	15.95	0.00	2.112	15.74	2.42	7.6	92.3	0.1	-1.26	1.56	0.12	0.06	0.26	10905	1389	4	0	0	0	0	logfile
✔	6GYL	0091	2024-04-17	2018-06-30	4.8	4.06	4.25	12.0	0.008	0.47	0.0	0.04	11.78	0.00	0.860	9.27	0.16	6.2	92.8	1.0	-3.33	0.32	0.00	—	3.5	0.003	0.80	0.0	0.05	14.75	0.01	2.093	18.95	0.00	5.4	94.4	0.3	-1.55	1.31	0.51	0.19	—	43409	5250	30	112	11	0	0	logfile
✔	8iEN	35387	2024-04-06	2023-02-15	3.25	3.66	3.30	7.2	0.004	1.21	0.0	0.04	14.04	0.00	2.168	8.43	0.24	5.0	94.9	0.1	-2.18	0.18	0.00	-0.05	3.5	0.003	1.04	0.0	0.04	16.13	0.01	2.094	16.86	1.18	8.4	91.6	0.0	-1.45	1.69	0.35	0.28	0.69	7678	991	2	0	4	0	0	logfile
✔	8A1S	15086	2024-04-08	2022-06-02	4.0	3.83	3.95	37.0	0.008	0.74	0.0	0.05	14.73	0.00	1.988	10.18	0.97	3.9	96.0	0.2	-0.24	0.26	0.00	—	3.8	0.005	0.94	1.0	0.05	13.34	0.01	2.007	21.22	1.97	6.6	93.2	0.2	-1.51	1.68	0.34	0.23	—	67152	8528	32	0	32	0	0	logfile
✔	6T59	10380	2024-04-15	2019-10-15	3.11	3.19	3.02	7.3	0.011	0.83	0.0	0.05	23.92	0.00	1.148	10.80	0.76	8.9	91.0	0.1	-5.04	0.22	0.01	0.07	3.1	0.004	0.83	0.0	0.04	24.85	0.01	0.989	23.83	2.09	8.7	91.2	0.0	-2.39	2.10	0.60	0.60	0.68	143047	7383	64	3890	225	0	0	logfile
✔	8GWB	34308	2024-04-11	2022-09-16	2.75	2.95	2.85	25.0	0.009	1.07	1.0	0.05	17.30	0.01	1.556	16.84	2.25	7.5	92.3	0.2	-2.40	0.29	0.01	0.23	25.0	0.004	0.81	0.0	0.04	17.94	0.01	1.944	21.98	3.71	9.2	90.7	0.1	-1.83	1.62	0.36	0.18	0.12	21879	2655	16	54	10	7	0	logfile
✔	7XMX	33307	2024-04-13	2022-04-27	3.62	3.63	3.44	22.0	0.012	1.30	7.0	0.09	12.65	0.01	1.407	4.82	1.34	6.6	93.3	0.1	-0.95	0.29	0.01	0.23	21.0	0.003	0.66	0.0	0.04	14.30	0.00	2.124	10.62	2.07	5.6	94.3	0.1	-0.83	1.07	0.32	0.14	0.16	28727	3700	12	0	24	0	0	logfile
✔	5GAK	3227	2024-04-10	2015-12-09	3.88	4.13	—	19.0	0.006	0.94	0.0	0.06	25.75	0.01	0.816	23.89	0.26	9.2	90.2	0.7	-3.81	0.21	0.02	0.28	3.9	0.003	0.77	0.0	0.04	24.43	0.00	1.986	20.92	2.20	8.8	90.9	0.4	-2.53	1.95	0.33	0.23	0.18	128975	6434	50	3597	234	0	0	logfile
✔	7VZ3	32219	2024-04-09	2021-11-15	2.46	2.36	2.43	19.0	0.009	1.08	2.0	0.07	12.80	0.01	2.203	4.37	0.26	5.4	94.5	0.1	-1.44	0.12	0.02	0.32	2.2	0.005	0.92	1.0	0.05	14.34	0.01	1.998	15.23	1.79	6.2	93.7	0.1	-1.36	1.71	0.22	0.15	0.55	17415	2256	3	0	0	0	0	logfile
✔	5MSH	3565	2024-04-05	2017-01-04	4.25	3.96	—	20.0	0.014	1.56	0.0	0.07	9.56	0.01	2.323	3.07	0.00	6.1	92.5	1.5	-0.93	0.01	0.02	—	3.8	0.003	0.78	0.0	0.05	13.12	0.01	2.193	15.96	0.00	7.5	92.5	0.0	-1.32	1.97	0.04	0.15	—	4287	551	2	0	0	0	0	logfile
✔	7QWS	14193	2024-04-12	2022-01-25	3.4	3.09	—	7.2	0.002	0.46	0.0	0.03	22.90	0.00	2.011	9.44	1.65	3.7	96.3	0.0	0.47	0.23	0.02	-0.02	3.0	0.004	0.88	0.0	0.04	24.72	0.01	0.987	26.15	2.43	8.3	91.7	0.1	-2.38	2.16	0.52	0.59	0.52	137913	7047	55	3769	126	0	0	logfile
✔	8FD5	29002	2024-04-05	2022-12-02	4.57	4.19	—	10.0	0.016	2.15	4.0	0.13	13.14	0.02	2.541	0.16	0.29	3.8	96.2	0.0	-1.38	0.28	0.02	—	3.6	0.002	0.67	0.0	0.04	13.21	0.01	2.134	9.88	0.00	6.0	94.0	0.0	-1.15	1.23	0.39	0.12	—	3214	419	1	0	0	0	0	logfile
✔	6RED	4850	2024-04-15	2019-04-12	3.0	3.22	3.14	27.0	0.012	1.04	0.0	0.06	14.61	0.01	2.140	5.83	0.31	4.7	95.2	0.1	-3.86	0.16	0.02	0.19	27.0	0.004	0.80	0.0	0.05	15.82	0.01	1.837	19.88	2.41	5.4	94.4	0.1	-1.04	0.96	0.24	0.16	0.19	33899	4503	25	0	10	0	0	logfile
✔	7XoV	33360	2024-04-06	2022-05-01	3.0	3.23	3.00	6.0	0.019	1.84	0.0	0.09	10.85	0.02	2.322	6.84	0.90	3.0	96.9	0.1	0.50	0.14	0.02	0.62	3.3	0.003	0.73	0.0	0.04	15.48	0.00	2.051	10.57	1.79	3.8	96.1	0.1	0.33	1.71	0.48	0.61	1.14	8218	1036	5	0	1	1	0	logfile
✔	7EGB	31111	2024-04-06	2021-03-24	3.3	3.51	—	34.0	0.008	1.11	62.0	0.07	15.49	0.01	1.322	21.13	3.22	7.3	91.9	0.8	-3.64	0.32	0.02	0.13	10.0	0.004	0.83	3.0	0.05	16.74	0.01	1.659	17.27	2.30	6.4	93.5	0.2	-0.97	1.04	0.41	0.18	0.03	113098	13887	63	138	18	0	0	logfile
✔	6FLQ	4275	2024-04-14	2018-01-26	3.6	3.93	3.76	40.0	0.016	1.33	0.0	0.07	15.27	0.01	1.897	5.97	1.40	10.8	89.1	0.1	-4.32	0.16	0.02	0.21	3.7	0.006	1.01	1.0	0.05	17.68	0.01	1.917	21.67	3.97	11.5	88.4	0.1	-1.93	2.09	0.27	0.21	-0.04	30201	3868	10	91	3	0	0	logfile
✔	6EU3	3958	2024-04-16	2017-10-27	3.3	3.38	—	6.0	0.004	1.06	0.0	0.06	11.41	0.01	1.167	5.05	0.26	12.9	86.6	0.5	-5.18	0.23	0.03	0.17	3.3	0.003	0.81	0.0	0.04	15.10	0.00	2.016	13.52	2.04	11.5	88.3	0.3	-2.44	1.48	0.54	0.49	0.40	38330	4825	22	0	7	0	0	logfile

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