Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XSL	33426	2024-04-08	2022-05-14	3.84	4.65	3.83	3.7	0.002	0.47	0.0	0.02	24.69	0.00	1.935	8.02	0.00	0.0	0.0	0.0	—	0.91	0.77	—	3.8	0.007	0.71	0.0	0.04	25.81	0.01	1.808	34.41	0.00	0.0	0.0	0.0	—	1.01	0.92	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	7PTQ	13633	2024-04-09	2021-09-27	4.08	6.47	4.22	4.0	0.005	0.78	0.0	0.04	23.49	0.00	1.983	0.92	0.00	0.0	0.0	0.0	—	0.91	0.80	—	4.0	0.006	0.69	0.0	0.04	27.08	0.00	1.850	44.22	0.00	0.0	0.0	0.0	—	2.75	0.96	0.94	—	17434	0	1	544	0	0	5847	logfile
✔	7XSM	33427	2024-04-08	2022-05-14	4.01	4.70	4.03	4.0	0.002	0.47	0.0	0.03	24.50	0.00	1.969	7.06	0.00	0.0	0.0	0.0	—	0.90	0.75	—	4.0	0.007	0.78	0.0	0.04	26.67	0.01	1.798	49.89	0.00	0.0	0.0	0.0	—	1.72	0.92	0.82	—	12464	0	1	388	0	0	4165	logfile
✔	8oHP	16883	2024-04-05	2023-03-21	2.7	3.15	1.65	3.0	0.015	1.28	0.0	1.27	31.06	0.00	2.283	2.70	0.00	0.0	100.0	0.0	-3.72	0.52	0.82	4.81	3.0	0.002	0.54	0.0	0.05	19.78	0.00	2.224	2.89	0.76	0.0	100.0	0.0	-2.47	1.11	0.49	0.81	4.16	2784	312	24	0	24	0	0	logfile
✔	7YG9	33812	2024-04-06	2022-07-11	2.68	3.47	2.76	2.8	0.005	0.51	0.0	0.03	24.67	0.00	1.804	13.88	0.00	0.0	0.0	0.0	—	0.86	0.81	—	2.8	0.006	0.62	0.0	0.04	24.38	0.00	1.873	17.58	0.00	0.0	0.0	0.0	—	0.39	0.92	0.92	—	8630	0	3	404	8	0	0	logfile
✔	7ZJ5	14741	2024-04-08	2022-04-08	4.55	5.91	5.09	4.4	0.002	0.65	0.0	0.04	23.36	0.00	2.256	0.50	0.00	0.0	0.0	0.0	—	0.92	0.85	—	4.5	0.008	0.84	0.0	0.04	26.06	0.01	1.650	66.01	0.00	0.0	0.0	0.0	—	3.95	0.94	0.90	—	12014	0	1	374	1	0	4030	logfile
✔	7YCi	33740	2024-04-06	2022-07-01	2.98	4.31	3.09	3.2	0.002	0.48	0.0	0.02	24.35	0.00	1.521	15.79	0.00	0.0	0.0	0.0	—	0.93	0.84	—	3.3	0.005	0.62	0.0	0.04	24.57	0.00	1.865	23.49	0.00	0.0	0.0	0.0	—	0.94	0.95	0.90	—	8474	0	2	395	4	0	0	logfile
✔	7XSK	33425	2024-04-08	2022-05-14	3.53	4.49	3.42	3.4	0.001	0.44	0.0	0.02	24.66	0.00	1.970	6.98	0.00	0.0	0.0	0.0	—	0.90	0.76	—	3.4	0.007	0.69	0.0	0.04	25.95	0.01	1.746	31.76	0.00	0.0	0.0	0.0	—	1.93	0.91	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	6UET	20756	2024-04-05	2019-09-23	4.1	4.91	—	5.1	0.010	1.61	0.0	0.07	26.22	0.02	1.977	4.88	0.00	0.0	0.0	0.0	—	0.62	0.73	—	5.0	0.007	0.95	0.0	0.05	27.75	0.01	1.730	49.85	0.00	0.0	0.0	0.0	—	0.76	0.66	0.80	—	3869	0	1	119	1	0	1291	logfile
✔	8i7N	35223	2024-04-06	2023-02-01	2.98	3.12	2.92	3.0	0.006	0.66	0.0	0.04	23.30	0.00	1.982	2.00	0.00	0.0	0.0	0.0	—	0.82	0.83	—	3.0	0.008	0.74	0.0	0.04	23.13	0.01	1.929	5.26	0.00	0.0	0.0	0.0	—	0.95	0.87	0.91	—	8979	0	1	418	29	0	0	logfile
✔	7YCH	33739	2024-04-06	2022-07-01	3.09	4.46	3.30	3.5	0.002	0.48	0.0	0.02	24.19	0.00	1.420	15.91	0.00	0.0	0.0	0.0	—	0.92	0.84	—	3.6	0.007	0.67	0.0	0.04	24.32	0.00	1.812	30.74	0.00	0.0	0.0	0.0	—	0.91	0.94	0.88	—	8661	0	2	404	4	0	0	logfile
✔	8HD6	34670	2024-04-06	2022-11-03	3.73	4.52	3.73	3.2	0.002	0.54	0.0	0.02	23.56	0.00	1.969	2.97	0.00	0.0	0.0	0.0	—	0.90	0.78	—	3.3	0.008	0.89	0.0	0.05	25.51	0.01	1.715	29.97	0.00	0.0	0.0	0.0	—	2.18	0.91	0.83	—	8980	0	1	419	25	0	0	logfile
✔	7R6L	24281	2024-04-06	2021-06-22	2.85	3.04	—	3.0	0.008	0.89	0.0	0.05	25.02	0.01	1.985	4.24	0.00	0.0	0.0	0.0	—	0.67	0.86	—	3.0	0.006	0.74	0.0	0.04	24.59	0.01	1.877	7.46	0.00	0.0	0.0	0.0	—	0.08	0.62	0.86	—	7857	0	3	366	20	0	0	logfile
✔	7XSN	33428	2024-04-06	2022-05-14	3.01	4.02	3.04	3.2	0.013	1.06	0.0	0.05	25.09	0.01	2.252	5.79	0.00	0.0	0.0	0.0	—	0.91	0.84	—	3.2	0.006	0.63	0.0	0.03	24.73	0.00	2.107	21.06	0.00	0.0	0.0	0.0	—	0.26	0.92	0.88	—	8279	0	1	387	0	0	0	logfile
✔	7EZ0	31385	2024-04-06	2021-06-01	3.14	3.26	—	3.2	0.003	0.56	0.0	0.03	23.64	0.00	1.804	2.25	0.00	0.0	0.0	0.0	—	0.74	0.79	—	3.2	0.006	0.70	0.0	0.04	23.85	0.00	1.860	8.26	0.00	0.0	0.0	0.0	—	1.55	0.77	0.86	—	8306	0	1	387	27	0	0	logfile
✔	6ULC	20813	2024-04-10	2019-10-07	4.6	4.75	—	4.5	0.006	0.94	0.0	0.07	21.25	0.00	2.086	5.68	0.29	0.0	100.0	0.0	-4.46	0.79	0.67	—	4.5	0.005	0.98	0.0	0.06	13.94	0.00	2.034	25.79	0.05	14.2	85.7	0.0	-3.27	0.86	0.79	0.71	—	19968	2301	46	0	142	0	0	logfile
✔	6X5i	22051	2024-04-06	2020-05-26	4.3	4.27	—	4.0	0.060	2.79	0.0	0.16	29.93	0.00	2.206	29.57	0.00	0.0	0.0	0.0	—	0.70	0.70	—	4.0	0.011	1.53	0.0	0.13	24.62	0.00	1.571	57.36	0.00	0.0	0.0	0.0	—	3.30	0.69	0.74	—	4480	70	70	0	280	0	0	logfile
✔	7PBW	13307	2024-04-07	2021-08-02	2.1	1.98	—	2.1	0.009	0.99	0.0	0.05	12.27	0.01	2.243	2.93	0.00	0.0	100.0	0.0	3.14	0.78	0.90	7.90	2.1	0.004	0.76	0.0	0.04	14.40	0.01	2.149	7.89	0.46	0.0	100.0	0.0	4.47	0.28	0.77	0.90	7.39	9500	873	54	0	81	230	0	logfile
✔	8AKQ	15489	2024-04-05	2022-07-31	4.1	4.54	4.23	4.3	0.004	0.61	0.0	0.03	15.04	0.00	2.262	5.43	0.00	0.0	100.0	0.0	1.78	0.86	0.80	—	4.3	0.005	0.72	0.0	0.03	14.67	0.00	1.883	35.62	0.00	0.5	99.5	0.0	4.28	0.80	0.88	0.83	—	107640	11760	120	0	60	0	11400	logfile
✔	6YoV	10864	2024-04-08	2020-04-15	3.42	4.61	—	3.9	0.011	1.14	0.0	0.07	25.19	0.01	2.395	0.86	0.00	0.0	100.0	0.0	0.87	0.88	0.82	1.84	3.8	0.004	0.69	0.0	0.03	26.15	0.00	2.146	10.21	2.17	1.6	98.4	0.0	2.49	1.23	0.88	0.85	1.88	12298	898	18	262	8	0	0	logfile

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