Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6CRQ	7568	2024-04-10	2018-03-19	4.2	3.69	4.20	4.1	0.015	1.50	1.0	0.09	14.01	0.01	1.839	7.27	1.06	2.3	97.7	0.0	1.77	0.68	0.76	—	3.6	0.008	0.96	0.0	0.05	13.37	0.01	2.043	14.76	0.05	6.7	93.3	0.0	-0.83	1.75	0.69	0.79	—	20271	2391	54	0	105	0	0	logfile
✔	7JYi	22526	2024-04-06	2020-08-30	3.4	3.52	—	3.5	0.008	0.75	0.0	0.05	16.05	0.00	2.104	14.16	5.45	10.3	89.2	0.5	-4.54	0.43	0.84	2.04	3.5	0.003	0.64	0.0	0.04	16.84	0.00	2.120	8.24	4.40	8.1	91.9	0.0	-1.68	0.64	0.40	0.85	2.13	8807	1152	4	0	0	0	0	logfile
✔	7VCT	31895	2024-04-15	2021-09-04	3.21	3.41	—	3.4	0.007	0.94	0.0	0.05	9.93	0.01	2.132	3.51	0.00	4.4	95.6	0.0	-3.08	0.77	0.82	2.62	3.3	0.003	0.59	0.0	0.04	13.38	0.00	2.001	6.86	1.25	3.9	96.1	0.0	0.54	1.30	0.76	0.84	2.00	35694	4506	12	0	18	0	0	logfile
✔	6Vo0	21256	2024-04-10	2020-01-29	3.52	3.99	—	3.9	0.022	1.80	0.0	0.10	11.75	0.01	2.380	1.66	0.00	3.6	95.6	0.8	0.22	0.77	0.83	2.86	3.9	0.003	0.75	0.0	0.04	13.89	0.00	2.163	11.00	1.95	6.1	93.1	0.7	-0.57	1.97	0.75	0.81	1.93	19494	2364	36	0	72	0	0	logfile
✔	7SL3	25190	2024-04-09	2021-10-22	3.4	3.65	—	3.5	0.002	0.54	0.0	0.04	13.25	0.00	2.238	8.44	0.32	6.4	93.4	0.2	-0.71	0.80	0.81	2.46	3.5	0.002	0.55	0.0	0.04	14.24	0.00	2.191	8.12	0.44	5.7	94.3	0.0	-0.65	1.13	0.81	0.84	2.55	14016	1736	6	0	0	0	0	logfile
✔	7oVB	13083	2024-04-07	2021-06-14	3.61	4.01	—	3.9	0.013	1.13	0.0	0.06	15.02	0.01	1.960	22.05	0.09	11.6	88.4	0.0	-4.16	0.79	0.81	2.01	3.9	0.003	0.61	0.0	0.04	16.39	0.00	2.186	10.72	1.77	3.5	96.5	0.0	-0.89	0.45	0.78	0.78	1.21	10854	1405	6	0	1	0	0	logfile
✔	6DRJ	7999	2024-04-15	2018-06-12	3.3	3.80	—	3.7	0.007	1.13	8.0	0.07	11.74	0.01	2.093	5.57	0.14	4.4	95.6	0.0	-3.18	0.67	0.79	1.95	3.7	0.002	0.59	0.0	0.04	14.20	0.00	2.165	4.34	2.47	3.3	96.7	0.0	0.33	1.21	0.68	0.82	1.69	35516	5064	8	0	8	0	0	logfile
✔	7FAS	31505	2024-04-07	2021-07-07	3.6	2.95	—	3.7	0.002	0.52	0.0	0.04	15.63	0.00	2.193	9.10	0.09	4.1	95.9	0.0	0.85	0.72	0.73	0.88	3.7	0.004	0.54	0.0	0.04	17.45	0.00	2.160	10.15	2.05	5.0	95.0	0.0	0.91	0.41	0.73	0.75	0.89	10173	1229	1	0	0	0	0	logfile
✔	7TYW	26196	2024-04-07	2022-02-14	3.0	2.92	2.97	3.1	0.004	0.68	1.0	0.04	13.38	0.00	2.199	5.38	1.41	1.9	98.1	0.0	-4.19	0.58	0.75	2.71	3.0	0.004	0.64	0.0	0.04	15.68	0.00	2.141	8.52	4.13	3.3	96.7	0.0	-0.40	0.53	0.60	0.80	3.11	9779	1256	10	0	7	1	0	logfile
✔	8HBV	34644	2024-04-05	2022-10-31	2.51	2.70	2.51	2.7	0.009	0.96	0.0	0.05	15.84	0.01	2.209	8.10	0.00	2.0	98.0	0.0	1.54	0.61	0.88	4.41	2.7	0.003	0.53	0.0	0.04	17.02	0.00	2.204	7.03	1.78	2.2	97.8	0.0	2.61	0.92	0.61	0.89	3.96	3279	414	3	0	3	0	0	logfile
✔	7ooB	13009	2024-04-13	2021-05-27	2.7	2.65	2.56	2.6	0.005	0.75	0.0	0.05	15.48	0.00	1.918	4.21	0.00	4.0	96.0	0.0	-1.31	0.78	0.81	3.80	2.6	0.003	0.57	0.0	0.04	17.47	0.00	1.814	7.85	1.04	3.8	96.2	0.0	-0.08	1.24	0.78	0.84	3.57	90745	5550	25	92	12	0	44484	logfile
✔	7oL0	12974	2024-04-14	2021-05-18	3.0	2.88	2.88	2.9	0.010	0.88	0.0	0.06	15.93	0.01	2.073	6.01	0.06	3.0	97.0	0.0	-1.45	0.73	0.84	3.95	2.9	0.003	0.56	0.0	0.04	17.91	0.00	2.005	9.68	1.27	2.5	97.5	0.0	0.46	0.39	0.73	0.87	3.25	32892	3912	22	79	9	0	0	logfile
✔	6S7P	10111	2024-04-06	2019-07-05	3.2	3.38	—	3.4	0.009	1.13	0.0	0.08	11.28	0.01	2.085	3.44	0.33	2.8	97.2	0.0	-3.03	0.65	0.83	4.30	3.4	0.003	0.53	0.0	0.04	13.95	0.00	1.941	5.67	2.39	1.8	98.2	0.0	1.07	0.53	0.64	0.85	2.56	9028	1128	1	0	11	0	0	logfile
✔	7VCV	31897	2024-04-15	2021-09-04	3.21	3.32	—	3.2	0.012	1.08	0.0	0.06	10.31	0.01	2.097	3.88	0.00	6.2	93.8	0.0	-3.61	0.75	0.81	2.50	3.3	0.003	0.55	0.0	0.04	14.04	0.00	2.021	5.30	1.32	4.9	95.1	0.0	0.27	1.24	0.75	0.83	1.76	36036	4548	12	0	24	0	0	logfile
✔	7EPD	31238	2024-04-09	2021-04-26	3.9	2.74	—	3.5	0.002	0.45	0.0	0.04	12.27	0.00	2.232	7.06	0.00	4.0	96.0	0.0	-2.46	0.69	0.63	0.57	3.5	0.003	0.59	0.0	0.04	14.21	0.00	2.212	12.50	3.17	5.1	94.9	0.0	0.18	0.55	0.72	0.69	1.35	10710	1569	2	0	0	0	0	logfile
✔	8DTM	27705	2024-04-08	2022-07-26	3.5	3.58	3.45	3.6	0.003	0.56	0.0	0.04	16.33	0.00	2.132	7.74	0.41	5.8	94.2	0.0	-0.79	0.71	0.80	2.96	3.6	0.003	0.52	0.0	0.04	16.91	0.00	2.145	7.19	2.33	5.6	94.4	0.0	-0.57	0.23	0.71	0.81	2.67	6498	802	3	0	0	0	0	logfile
✔	7UJN	26567	2024-04-09	2022-03-31	2.89	2.89	2.89	2.9	0.015	1.45	0.0	0.05	15.36	0.00	2.175	9.00	0.00	3.3	96.7	0.0	0.57	0.64	0.76	3.10	2.9	0.003	0.60	0.0	0.04	17.44	0.01	2.165	6.24	1.73	4.0	96.0	0.0	-0.14	0.44	0.70	0.81	2.68	16272	1948	8	0	12	0	0	logfile
✔	7NH9	12321	2024-04-08	2021-02-10	3.03	3.58	—	3.4	0.007	0.80	0.0	0.04	14.80	0.00	2.236	12.71	3.31	11.7	88.3	0.0	-2.35	0.75	0.84	2.46	3.4	0.003	0.62	0.0	0.04	15.85	0.00	2.267	11.60	1.03	9.2	90.8	0.0	1.15	0.50	0.75	0.85	2.31	13120	1635	5	0	0	0	0	logfile
✔	7Uo5	26640	2024-04-08	2022-04-12	3.1	3.62	3.02	3.0	0.015	2.22	0.0	0.12	31.48	0.06	2.328	2.33	1.02	6.4	92.7	0.9	-2.73	0.80	0.60	3.19	3.0	0.005	0.80	0.0	0.05	30.31	0.01	1.807	31.79	3.06	14.5	84.5	0.9	-3.52	1.54	0.81	0.66	1.33	13979	112	2	373	7	0	5024	logfile
✔	6CNM	7537	2024-04-08	2018-03-08	3.4	3.51	—	3.5	0.010	1.11	0.0	0.06	14.65	0.01	2.331	1.47	0.00	4.3	95.7	0.0	-4.29	0.64	0.84	3.41	3.4	0.003	0.53	0.0	0.04	13.64	0.00	2.201	3.51	3.20	3.3	96.7	0.0	1.90	0.55	0.64	0.85	2.18	12541	1700	12	0	17	0	0	logfile

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