Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XKW	33209	2024-04-05	2022-04-20	3.1	3.30	—	3.4	0.007	1.61	0.0	0.06	14.10	0.01	1.547	9.68	1.11	3.0	96.4	0.6	-1.01	0.61	0.77	3.43	3.4	0.003	0.69	0.0	0.04	15.60	0.00	2.212	6.17	0.67	3.2	96.8	0.0	-0.02	0.45	0.61	0.79	2.94	4132	499	2	0	4	0	0	logfile
✔	8WAM	37397	2024-04-06	2023-09-07	3.23	3.48	3.24	3.5	0.002	0.45	0.0	0.04	17.90	0.00	2.211	5.64	0.11	1.7	98.3	0.0	1.70	0.60	0.77	1.11	3.5	0.002	0.52	0.0	0.04	17.76	0.00	2.029	5.99	2.25	2.2	97.8	0.0	1.17	0.40	0.59	0.78	1.15	8650	1102	4	0	4	0	0	logfile
✔	8FEG	29026	2024-04-06	2022-12-06	2.54	2.10	2.57	1.6	0.014	0.96	0.0	0.15	14.30	0.01	2.217	8.48	1.52	5.0	93.9	1.1	-0.96	0.75	0.75	3.13	1.9	0.004	0.80	0.0	0.06	16.01	0.00	2.159	8.42	3.05	4.2	95.8	0.0	0.22	0.94	0.78	0.80	2.64	8539	1105	7	0	5	2	0	logfile
✔	8JA3	36124	2024-04-06	2023-05-05	3.94	2.74	3.93	2.1	0.007	0.94	0.0	0.05	14.00	0.01	2.242	12.70	2.26	7.3	92.7	0.0	-1.46	0.65	0.59	1.74	2.1	0.003	0.69	0.0	0.04	15.19	0.00	2.233	12.55	6.25	6.3	93.7	0.0	-1.01	0.60	0.66	0.60	1.22	7130	1053	8	0	0	0	0	logfile
✔	8H3Q	34473	2024-04-09	2022-10-09	3.76	2.75	3.79	2.8	0.007	1.14	5.0	0.06	20.58	0.01	2.017	18.05	10.27	11.0	88.1	0.9	-1.84	0.70	0.65	0.62	1.9	0.004	0.85	0.0	0.05	19.14	0.01	2.021	20.44	4.62	9.4	90.4	0.3	-0.25	1.26	0.71	0.71	0.71	15511	1956	4	0	3	0	0	logfile
✔	8WD6	37455	2024-04-06	2023-09-14	2.87	3.11	2.89	3.2	0.003	0.56	1.0	0.04	16.49	0.00	2.431	5.56	0.12	2.7	97.3	0.0	1.60	0.57	0.77	1.54	3.2	0.004	0.65	0.0	0.04	17.54	0.00	2.100	6.18	3.35	4.1	95.9	0.0	1.22	1.19	0.57	0.79	1.64	7973	1025	2	0	0	0	0	logfile
✔	8FJA	29220	2024-04-06	2022-12-19	3.0	3.44	2.98	3.3	0.007	0.82	0.0	0.05	12.62	0.01	2.220	6.93	0.00	5.8	94.2	0.0	-2.60	0.71	0.89	4.79	3.3	0.003	0.55	0.0	0.04	15.32	0.00	2.244	5.34	1.14	3.4	96.6	0.0	0.08	0.38	0.71	0.89	4.17	6419	812	5	0	0	0	0	logfile
✔	8PoC	17788	2024-04-05	2023-07-04	4.0	4.12	3.87	4.1	0.003	0.67	0.0	0.03	14.86	0.00	2.324	6.38	0.00	3.0	97.0	0.0	2.14	0.77	0.81	—	4.1	0.003	0.59	0.0	0.03	17.66	0.00	2.263	7.20	4.42	2.1	97.9	0.0	3.03	1.42	0.77	0.82	—	4924	616	4	0	0	0	0	logfile
✔	8JL9	36389	2024-04-08	2023-06-02	2.65	2.16	2.47	2.0	0.005	0.86	1.0	0.05	28.86	0.01	1.865	2.36	0.00	1.9	98.1	0.0	0.24	0.60	0.65	2.76	1.7	0.004	0.60	0.0	0.04	28.26	0.00	2.247	4.44	1.44	1.4	98.6	0.0	2.82	1.15	0.80	0.85	3.39	12314	753	10	310	0	0	0	logfile
✔	8Q8L	18254	2024-04-05	2023-08-18	3.04	3.14	2.87	3.3	0.011	2.07	2.0	0.11	11.49	0.01	2.539	0.29	0.00	5.3	94.5	0.2	-2.17	0.33	0.74	5.41	3.2	0.006	1.39	0.0	0.05	14.32	0.00	2.064	6.19	3.85	4.8	95.2	0.0	-2.50	0.75	0.43	0.83	4.78	3405	447	6	0	0	0	0	logfile
✔	8JZS	36752	2024-04-06	2023-07-06	2.95	3.15	2.92	3.2	0.008	0.93	0.0	0.06	13.27	0.01	2.299	10.90	0.00	4.4	95.2	0.4	0.71	0.69	0.82	1.94	3.2	0.003	0.59	0.0	0.04	14.61	0.00	2.206	5.71	2.13	4.6	95.4	0.0	1.31	0.53	0.64	0.83	2.32	7500	972	4	0	6	0	0	logfile
✔	8PSP	17859	2024-04-13	2023-07-13	2.9	2.48	2.81	2.8	0.013	1.86	4.0	0.09	14.80	0.01	2.135	2.92	0.89	5.5	94.1	0.3	-3.17	0.65	0.88	3.89	2.8	0.003	0.57	0.0	0.04	16.07	0.00	2.139	6.08	1.14	2.4	97.6	0.0	1.08	0.41	0.64	0.87	3.27	29695	3788	5	0	2	0	0	logfile
✔	8oKX	16933	2024-04-07	2023-03-29	3.51	5.05	3.73	3.8	0.010	0.99	0.0	0.05	16.07	0.01	1.857	12.70	0.42	6.3	93.2	0.5	-1.03	0.63	0.52	0.76	3.8	0.004	0.91	0.0	0.05	16.91	0.00	2.135	22.42	3.38	6.6	93.4	0.0	-0.97	2.69	0.72	0.75	0.96	6399	799	5	0	1	0	0	logfile
✔	8T12	40952	2024-04-07	2023-06-01	3.34	3.81	3.37	3.7	0.004	0.69	0.0	0.04	17.59	0.00	2.147	9.16	0.60	5.6	94.0	0.4	0.31	0.70	0.73	1.49	3.7	0.003	0.60	0.0	0.04	18.10	0.00	2.136	6.70	2.81	5.7	94.1	0.2	0.49	0.58	0.79	0.83	1.74	10813	1343	3	0	2	0	0	logfile
✔	8WPU	37724	2024-04-10	2023-10-10	3.1	2.87	—	3.2	0.004	0.59	0.0	0.04	16.87	0.00	2.163	9.80	0.00	4.6	95.4	0.0	-0.69	0.76	0.82	2.08	3.2	0.004	0.59	0.0	0.04	16.24	0.00	2.125	10.35	4.84	5.5	94.5	0.0	-0.77	0.32	0.76	0.83	2.23	18794	2455	10	0	22	0	0	logfile
✔	8HF5	34713	2024-04-06	2022-11-09	2.9	3.54	3.39	3.4	0.011	1.38	7.0	0.10	14.89	0.01	2.063	7.39	3.74	5.4	93.9	0.6	-1.78	0.70	0.85	2.12	3.4	0.003	0.61	0.0	0.04	16.69	0.00	1.977	5.62	1.72	5.3	94.6	0.1	0.79	1.32	0.70	0.86	1.39	8918	1126	4	0	4	0	0	logfile
✔	8WRL	37779	2024-04-06	2023-10-15	3.36	3.59	3.33	3.7	0.004	0.70	0.0	0.05	19.51	0.00	1.771	9.25	0.58	4.5	95.5	0.0	-0.27	0.54	0.77	1.66	3.7	0.003	0.51	0.0	0.04	17.32	0.00	2.222	8.85	4.18	3.7	96.3	0.0	0.43	0.34	0.52	0.77	1.34	6472	790	4	0	5	0	0	logfile
✔	8oX9	17261	2024-04-07	2023-05-01	2.72	3.18	2.75	3.1	0.004	0.61	0.0	0.06	14.92	0.00	1.787	4.67	0.00	2.4	97.6	0.0	0.10	0.65	0.80	3.10	3.1	0.003	0.56	0.0	0.04	16.09	0.00	1.947	7.44	1.85	2.9	97.1	0.1	0.92	0.37	0.58	0.77	2.79	11582	1411	6	0	9	9	0	logfile
✔	8SC6	40339	2024-04-05	2023-04-04	3.13	3.36	3.12	3.4	0.003	0.50	0.0	0.03	8.71	0.00	2.273	3.28	0.81	0.9	99.1	0.0	2.80	0.58	0.82	2.08	3.4	0.002	0.48	0.0	0.03	12.71	0.00	2.229	4.99	1.62	1.6	98.4	0.0	2.54	0.48	0.54	0.81	1.84	3479	447	2	0	1	0	0	logfile
✔	8BUZ	16252	2024-04-07	2022-12-01	3.5	3.43	3.54	3.4	0.003	0.62	0.0	0.04	17.23	0.00	1.915	11.78	0.46	4.8	95.2	0.0	0.41	0.74	0.76	1.17	3.5	0.003	0.61	0.0	0.04	17.54	0.00	1.874	11.37	4.25	5.2	94.8	0.0	0.96	1.40	0.74	0.78	1.24	9921	1223	4	0	3	0	0	logfile

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