Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8CUi	27000	2024-04-07	2022-05-17	2.55	2.73	2.53	2.8	0.003	0.53	0.0	0.04	15.72	0.00	2.264	4.77	0.00	1.7	98.3	0.0	1.71	0.63	0.85	3.07	2.8	0.003	0.55	0.0	0.04	16.20	0.00	2.274	4.57	2.15	2.1	97.9	0.0	2.11	0.23	0.61	0.85	2.96	9357	1230	3	0	0	0	0	logfile
✔	8oPQ	17085	2024-04-07	2023-04-07	3.28	2.33	3.33	2.2	0.003	0.52	0.0	0.04	9.91	0.01	2.245	8.25	0.00	3.8	96.2	0.0	1.64	0.77	0.77	3.11	2.2	0.003	0.61	0.0	0.04	14.93	0.00	2.144	8.39	3.55	3.7	96.3	0.0	2.20	0.53	0.76	0.79	2.99	10006	1296	4	0	2	0	0	logfile
✔	8SEY	40433	2024-04-10	2023-04-10	2.99	3.15	3.05	3.1	0.002	0.46	0.0	0.04	13.63	0.00	2.224	4.52	0.00	2.5	97.5	0.0	1.73	0.64	0.84	2.70	3.1	0.003	0.51	0.0	0.04	16.54	0.00	2.175	5.23	2.42	2.2	97.8	0.0	1.94	0.37	0.65	0.87	2.62	20568	2504	8	0	8	0	0	logfile
✔	8HMC	34895	2024-04-11	2022-12-03	3.6	3.94	3.81	3.9	0.003	0.58	0.0	0.04	16.34	0.00	2.057	8.37	0.13	6.0	94.0	0.0	-0.07	0.72	0.75	1.46	3.9	0.004	0.61	0.0	0.04	17.54	0.00	2.038	9.29	3.38	7.3	92.5	0.1	-0.38	0.46	0.73	0.79	1.58	21797	2693	5	0	2	0	0	logfile
✔	8GRS	34214	2024-04-05	2022-09-02	3.3	3.91	3.48	3.8	0.016	1.94	6.0	0.13	26.31	0.02	1.285	16.08	44.03	21.3	72.9	5.8	-5.46	0.61	0.72	1.86	3.8	0.004	0.82	0.0	0.04	18.81	0.01	2.211	16.75	6.42	11.5	88.0	0.5	-1.15	1.94	0.51	0.81	1.51	5148	626	1	0	1	0	0	logfile
✔	8oDV	16819	2024-04-06	2023-03-09	4.7	4.86	4.41	4.7	0.007	1.10	0.0	0.05	14.06	0.01	2.192	25.76	0.00	4.6	95.4	0.0	-4.04	0.71	0.79	—	4.7	0.003	0.75	0.0	0.04	13.98	0.00	2.161	13.18	0.00	3.3	96.7	0.0	0.51	1.46	0.71	0.79	—	8233	1022	5	0	1	0	0	logfile
✔	8GZZ	34406	2024-04-06	2022-09-27	3.52	3.89	3.45	3.7	0.004	0.62	0.0	0.04	12.19	0.00	2.248	8.72	0.00	5.0	95.0	0.0	-0.99	0.78	0.86	3.03	3.7	0.003	0.59	0.0	0.04	14.42	0.00	2.253	7.78	2.11	4.4	95.6	0.0	-1.55	0.48	0.78	0.86	3.11	6568	854	6	0	0	0	0	logfile
✔	7Y1M	33566	2024-04-06	2022-06-08	3.57	3.80	3.54	3.7	0.004	0.53	0.0	0.04	12.73	0.00	2.234	8.36	0.33	2.1	97.9	0.0	2.52	0.69	0.85	1.58	3.8	0.003	0.60	0.0	0.04	14.61	0.00	1.985	7.13	2.85	1.8	98.2	0.0	2.18	0.45	0.69	0.85	0.96	8957	1166	1	0	5	0	0	logfile
✔	8DZP	27804	2024-04-06	2022-08-08	2.71	2.09	2.70	1.9	0.019	0.72	0.0	0.10	13.90	0.01	2.216	5.26	0.11	3.6	96.4	0.0	-0.46	0.78	0.78	3.63	1.9	0.005	0.64	0.0	0.04	15.66	0.00	2.112	8.18	2.35	4.5	95.5	0.0	0.44	0.33	0.81	0.82	3.70	8657	1120	6	0	1	0	0	logfile
✔	8DWW	27763	2024-04-16	2022-08-02	3.13	2.40	3.26	2.2	0.003	0.64	0.0	0.05	13.53	0.00	2.062	2.35	0.26	1.4	98.5	0.1	0.92	0.55	0.79	3.10	2.1	0.005	0.75	0.0	0.05	14.88	0.01	2.096	3.73	2.11	4.8	95.2	0.0	-0.89	0.46	0.55	0.80	2.85	37900	4916	28	0	12	0	0	logfile
✔	8ESZ	28582	2024-04-09	2022-10-15	3.4	3.70	3.48	3.7	0.009	1.07	0.0	1.04	16.72	0.01	1.219	5.95	0.80	3.0	96.9	0.1	-2.14	0.72	0.84	2.39	3.7	0.008	1.55	0.0	0.31	16.89	0.00	2.087	9.72	1.98	2.5	97.5	0.0	1.01	0.96	0.75	0.88	2.07	67757	8114	68	0	95	0	0	logfile
✔	8ETM	28594	2024-04-06	2022-10-17	3.2	3.43	3.31	3.6	0.009	0.84	0.0	0.17	15.27	0.01	2.226	11.50	0.00	11.7	88.3	0.0	-3.61	0.57	0.75	1.94	3.5	0.003	0.76	0.0	0.04	17.02	0.00	2.192	9.14	2.24	7.1	92.9	0.0	0.59	1.22	0.62	0.85	2.19	6800	812	4	0	2	0	0	logfile
✔	8FLW	29288	2024-04-09	2022-12-22	3.58	3.64	3.59	3.7	0.005	0.80	5.0	0.06	17.20	0.01	1.644	4.67	0.81	4.5	95.3	0.3	0.01	0.76	0.79	2.93	3.7	0.003	0.64	0.0	0.05	14.61	0.00	2.141	5.87	2.19	4.2	95.8	0.0	-0.47	1.27	0.78	0.81	2.85	16868	1971	37	0	102	0	0	logfile
✔	8ESW	28581	2024-04-08	2022-10-15	3.3	3.67	3.46	3.7	0.006	1.01	0.0	1.05	16.42	0.01	1.932	5.33	0.63	3.0	97.0	0.0	-2.36	0.74	0.83	2.53	3.6	0.008	1.57	0.0	0.31	16.74	0.00	1.281	9.14	1.61	2.7	97.3	0.0	0.83	0.37	0.75	0.87	2.20	66555	8036	64	0	76	0	0	logfile
✔	8H9S	34580	2024-04-16	2022-10-25	2.53	2.96	—	3.0	0.006	0.69	0.0	0.04	15.01	0.00	1.895	6.70	0.05	2.9	97.0	0.1	-2.13	0.74	0.83	3.89	3.0	0.003	0.57	0.0	0.04	16.61	0.00	1.945	7.06	1.40	2.1	97.9	0.0	1.01	0.83	0.63	0.85	3.34	38930	5064	36	0	13	0	0	logfile
✔	8C5Z	16445	2024-04-14	2023-01-10	3.8	4.17	3.98	4.1	0.004	0.70	0.0	0.05	14.17	0.00	2.063	12.18	0.17	3.1	96.7	0.2	-0.10	0.76	0.72	0.95	4.1	0.003	0.68	0.0	0.05	16.48	0.00	2.122	11.85	2.24	3.0	96.8	0.2	0.07	0.78	0.80	0.80	1.05	16615	2044	16	0	4	0	0	logfile
✔	8SEX	40432	2024-04-10	2023-04-10	2.84	2.99	2.84	3.0	0.005	0.56	0.0	0.04	12.78	0.01	0.419	6.47	2.15	2.8	97.1	0.2	1.60	0.63	0.81	2.20	3.0	0.003	0.50	0.0	0.04	16.24	0.00	2.230	6.05	3.49	1.8	98.1	0.2	2.17	0.53	0.64	0.83	2.05	20568	2504	8	0	8	0	0	logfile
✔	8G3R	29709	2024-04-09	2023-02-08	2.3	3.00	2.32	2.8	0.014	1.67	4.0	0.09	14.04	0.01	2.187	0.45	0.06	3.4	96.4	0.2	-0.80	0.84	0.92	6.44	2.8	0.003	0.64	0.0	0.05	13.57	0.00	2.129	4.79	1.03	2.6	97.2	0.2	0.07	0.44	0.75	0.88	5.40	14899	1790	38	0	86	0	0	logfile
✔	8EX7	28653	2024-04-05	2022-10-24	3.53	3.77	3.48	3.8	0.004	0.69	0.0	0.04	13.31	0.01	2.211	6.36	0.00	4.2	95.8	0.0	0.68	0.59	0.76	2.20	3.8	0.003	0.60	0.0	0.04	15.23	0.00	2.215	7.14	2.69	2.7	97.3	0.0	2.31	0.38	0.59	0.75	1.40	3177	414	1	0	0	0	0	logfile
✔	8GVW	34300	2024-04-11	2022-09-16	3.59	3.83	3.61	3.9	0.006	0.89	0.0	0.05	15.33	0.01	2.233	3.61	0.17	2.3	97.7	0.0	0.01	0.67	0.81	1.80	3.9	0.003	0.61	0.0	0.04	16.66	0.00	2.224	10.07	1.29	3.1	96.9	0.0	2.45	0.63	0.69	0.83	2.08	22496	2684	8	0	24	0	0	logfile

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