Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7A6A	11668	2024-04-12	2020-08-25	1.15	1.13	—	1.2	0.018	1.70	24.0	0.16	14.68	0.01	1.857	3.78	3.03	1.2	98.8	0.0	2.45	0.47	0.61	9.02	1.2	0.003	0.58	0.0	0.04	14.97	0.00	2.193	3.34	1.82	1.8	98.2	0.0	4.63	0.40	0.69	0.82	8.90	41613	4152	72	0	32	4621	0	logfile
✔	7A6B	11669	2024-04-12	2020-08-25	1.33	1.21	—	1.3	0.015	1.60	24.0	0.12	16.78	0.01	1.893	4.97	4.17	1.2	98.8	0.0	2.52	0.52	0.65	9.13	1.3	0.002	0.60	0.0	0.04	14.49	0.00	2.224	2.85	1.79	1.8	98.2	0.0	4.85	0.38	0.75	0.86	9.05	41494	4152	72	0	32	3854	0	logfile
✔	7RRP	24665	2024-04-10	2021-08-10	1.27	1.32	—	1.4	0.003	0.61	0.0	0.04	14.22	0.00	2.007	2.86	0.00	2.4	97.6	0.0	4.01	0.63	0.76	9.05	1.4	0.004	0.66	0.0	0.04	14.32	0.00	2.044	2.00	0.61	1.8	98.2	0.0	3.97	0.06	0.70	0.83	9.05	72254	4128	72	0	278	2496	34080	logfile
✔	7VD8	31910	2024-04-16	2021-09-06	1.96	1.42	2.01	1.7	0.002	0.54	0.0	0.04	16.17	0.00	2.013	2.67	0.03	2.2	97.8	0.0	5.39	0.75	0.80	7.92	1.7	0.003	0.57	0.0	0.04	16.51	0.00	1.985	2.08	0.56	1.2	98.8	0.0	5.31	0.23	0.74	0.80	8.07	38201	4128	72	0	329	2472	0	logfile
✔	8EN7	28269	2024-04-10	2022-09-28	1.68	1.48	1.71	1.6	0.012	1.29	0.0	0.07	15.67	0.01	0.731	8.76	1.27	1.2	98.8	0.0	2.40	0.61	0.75	8.54	1.6	0.002	0.54	0.0	0.04	15.27	0.00	2.235	4.30	0.63	1.2	98.8	0.0	5.30	0.41	0.75	0.85	7.89	37614	4128	54	0	6	2544	0	logfile
✔	8CPU	16786	2024-04-15	2023-03-03	1.76	1.54	1.80	1.6	0.004	0.71	0.0	0.05	14.91	0.01	1.976	4.95	0.00	1.0	99.0	0.0	2.29	0.71	0.77	8.55	1.6	0.003	0.53	0.0	0.04	15.47	0.00	2.115	4.47	0.30	1.8	98.2	0.0	4.56	0.31	0.73	0.80	8.29	35823	4152	72	0	38	1705	0	logfile
✔	8CPM	16783	2024-04-15	2023-03-03	1.81	1.57	1.84	1.6	0.005	0.85	0.0	0.05	15.21	0.01	1.916	7.77	0.00	1.0	99.0	0.0	2.32	0.70	0.75	7.56	1.6	0.003	0.58	0.0	0.04	16.44	0.00	2.052	6.36	0.63	2.2	97.8	0.0	4.49	0.34	0.71	0.77	7.63	36090	4152	72	0	38	1972	0	logfile
✔	8EMQ	28259	2024-04-10	2022-09-28	1.66	1.59	1.68	1.6	0.011	1.31	0.0	0.07	15.25	0.01	0.733	5.98	1.91	0.6	99.4	0.0	2.37	0.66	0.78	9.05	1.6	0.003	0.59	0.0	0.04	14.39	0.00	2.083	3.47	0.64	1.2	98.8	0.0	5.32	0.38	0.81	0.89	8.89	37805	4128	72	0	30	2975	0	logfile
✔	6Z9F	11122	2024-04-12	2020-06-03	1.56	1.61	1.61	1.6	0.015	1.74	48.0	0.10	15.51	0.01	1.782	5.46	3.66	1.7	98.3	0.0	2.70	0.68	0.69	8.63	1.6	0.003	0.61	0.0	0.04	15.04	0.00	2.187	3.77	2.46	1.8	98.2	0.0	4.81	0.92	0.84	0.86	8.53	41020	4152	72	0	32	4172	0	logfile
✔	8CPX	16789	2024-04-15	2023-03-03	1.76	1.61	1.78	1.6	0.005	0.80	0.0	0.06	14.97	0.01	2.063	5.37	0.00	1.0	99.0	0.0	2.18	0.75	0.81	8.02	1.6	0.003	0.65	0.0	0.04	15.93	0.00	2.149	4.02	1.31	1.2	98.8	0.0	3.96	0.38	0.79	0.85	7.66	35827	4152	72	0	38	1709	0	logfile
✔	8CA7	16520	2024-04-10	2023-01-24	2.06	1.61	1.93	1.9	0.012	1.53	0.0	0.14	21.90	0.03	1.726	0.60	0.71	3.0	96.8	0.1	-1.46	0.62	0.75	4.98	1.9	0.004	0.84	0.0	0.05	22.51	0.01	1.729	8.76	1.28	2.3	97.6	0.1	1.16	0.41	0.69	0.78	5.06	18093	848	19	502	42	543	0	logfile
✔	8X79	38095	2024-04-09	2023-11-23	2.41	1.62	2.61	3.0	0.003	0.56	2.0	0.04	14.62	0.00	2.218	3.41	1.30	1.6	98.4	0.0	-0.03	0.62	0.80	3.50	2.9	0.004	0.58	0.0	0.04	17.18	0.00	2.019	6.44	2.71	2.6	97.4	0.0	1.29	2.53	0.61	0.84	3.70	16148	1055	6	0	1	0	7994	logfile
✔	8CPW	16788	2024-04-15	2023-03-03	1.79	1.64	1.78	1.7	0.005	0.84	0.0	0.06	14.35	0.01	2.180	3.39	0.63	1.0	99.0	0.0	2.13	0.77	0.83	8.34	1.6	0.003	0.66	0.0	0.04	14.70	0.00	2.220	4.01	0.65	1.2	98.8	0.0	4.15	0.23	0.77	0.85	7.80	36004	4152	72	0	38	1886	0	logfile
✔	7QQ3	14121	2024-04-13	2022-01-06	2.1	1.65	2.18	1.9	0.008	0.75	5.0	0.05	23.40	0.02	1.832	2.70	4.22	3.6	96.0	0.4	-0.31	0.50	0.61	3.73	1.7	0.006	1.04	4.0	0.05	23.18	0.01	1.702	7.18	2.60	4.2	95.6	0.2	-0.69	1.89	0.64	0.70	4.04	87594	2903	35	3016	154	28	0	logfile
✔	7QK5	14038	2024-04-07	2021-12-17	1.92	1.67	1.83	2.2	0.011	1.89	4.0	0.10	10.96	0.01	2.401	0.10	0.00	4.5	95.5	0.0	-1.58	0.32	0.78	6.85	2.2	0.004	0.64	0.0	0.05	18.07	0.01	2.251	3.63	2.22	3.7	96.3	0.0	-1.68	1.63	0.36	0.83	7.23	10485	666	18	0	36	0	5337	logfile
✔	8CPS	16784	2024-04-15	2023-03-03	1.82	1.69	1.90	1.7	0.003	0.66	0.0	0.05	15.42	0.01	2.116	2.82	0.00	1.0	99.0	0.0	2.28	0.75	0.81	8.54	1.7	0.003	0.62	0.0	0.04	16.86	0.00	2.146	4.22	0.00	1.2	98.8	0.0	4.63	0.25	0.77	0.83	8.30	36034	4152	72	0	38	1916	0	logfile
✔	8QBT	18320	2024-04-14	2023-08-25	2.2	1.69	2.17	1.9	0.008	1.71	6.0	0.11	22.93	0.02	1.281	0.93	0.91	5.5	94.3	0.2	-2.11	0.50	0.69	4.39	1.7	0.006	1.01	0.0	0.05	23.55	0.01	1.735	9.74	3.70	5.4	94.5	0.1	-1.21	0.92	0.58	0.73	4.38	141132	4848	81	4738	376	1239	0	logfile
✔	8F0K	28759	2024-04-07	2022-11-03	1.9	1.70	1.92	1.9	0.004	0.59	0.0	0.04	14.28	0.01	2.252	4.34	0.91	1.2	98.8	0.0	-1.70	0.50	0.67	4.75	1.9	0.003	0.59	0.0	0.04	16.18	0.00	2.197	5.48	1.55	1.9	98.1	0.0	1.66	0.58	0.57	0.73	5.02	10553	1272	12	0	18	39	0	logfile
✔	7T2G	25612	2024-04-06	2021-12-04	2.5	1.71	—	1.4	0.007	0.88	0.0	0.05	12.03	0.01	2.214	13.39	1.00	3.5	96.5	0.0	0.61	0.80	0.81	5.15	1.4	0.003	0.57	0.0	0.04	14.59	0.00	2.145	11.70	2.00	2.1	97.9	0.0	0.68	0.37	0.80	0.81	4.59	6922	898	4	0	3	8	0	logfile
✔	7VZ4	32220	2024-04-07	2021-11-15	1.89	1.72	—	1.9	0.010	1.17	0.0	0.08	28.81	0.00	2.167	2.63	0.97	1.6	98.4	0.0	0.11	0.75	0.82	7.08	1.9	0.004	0.63	0.0	0.04	28.12	0.00	2.311	4.46	1.13	0.7	99.3	0.0	2.95	0.80	0.77	0.86	7.59	11843	746	10	290	0	0	0	logfile

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