Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6SHT	10205	2024-04-16	2019-08-08	2.73	2.88	2.75	2.8	0.015	1.55	0.0	0.07	19.28	0.01	0.000	7.75	5.56	0.6	98.8	0.6	-2.82	0.81	0.91	3.74	2.8	0.003	0.55	0.0	0.04	19.44	0.00	0.000	4.10	3.19	1.8	97.8	0.3	5.24	1.77	0.72	0.85	2.06	37152	4176	24	0	48	1728	0	logfile
✔	6PUW	20483	2024-04-07	2019-07-18	2.9	3.21	2.93	3.1	0.013	0.77	0.0	0.04	20.01	0.00	0.000	7.69	0.20	2.1	97.9	0.0	-2.24	0.74	0.90	4.70	3.1	0.004	0.58	0.0	0.04	21.45	0.00	0.000	8.88	2.15	3.5	96.5	0.0	0.46	0.36	0.69	0.90	4.22	11116	1170	28	72	10	312	0	logfile
✔	6PUT	20481	2024-04-07	2019-07-18	2.9	3.22	2.96	3.2	0.007	0.82	0.0	0.05	19.07	0.01	0.000	5.13	0.20	2.5	97.5	0.0	-3.43	0.73	0.90	4.56	3.2	0.003	0.54	0.0	0.04	20.57	0.00	0.000	8.58	2.02	2.0	98.0	0.0	0.73	0.88	0.65	0.89	4.05	10976	1170	28	68	8	308	0	logfile
✔	7A5V	11657	2024-04-11	2020-08-22	1.7	1.73	1.69	1.8	0.014	1.59	0.0	0.09	14.87	0.02	0.000	2.35	0.48	2.2	97.8	0.0	-0.05	0.61	0.79	6.90	1.8	0.002	0.61	0.0	0.05	13.88	0.00	0.000	4.57	0.57	0.5	99.5	0.0	2.01	0.35	0.71	0.86	6.31	21155	2275	30	0	85	1015	0	logfile
✔	8PVB	17960	2024-04-10	2023-07-17	3.6	3.05	3.14	3.2	0.010	1.70	0.0	0.09	16.05	0.01	0.000	1.17	1.27	1.6	98.4	0.0	-0.14	0.60	0.79	4.63	3.2	0.004	0.61	0.0	0.04	15.10	0.00	0.000	6.41	1.77	1.2	98.8	0.0	0.62	1.00	0.73	0.84	3.89	19225	2275	25	0	80	0	0	logfile
✔	7EFC	31083	2024-04-05	2021-03-21	1.7	1.76	1.76	1.9	0.032	3.16	16.0	0.09	14.88	0.02	0.001	2.15	2.15	2.5	96.6	0.8	-0.84	0.75	0.84	6.42	1.9	0.006	0.87	0.0	0.05	14.55	0.01	1.768	10.33	0.54	3.8	96.2	0.0	0.14	0.88	0.80	0.85	6.64	4004	480	4	0	4	156	0	logfile
✔	6ZP7	11337	2024-04-11	2020-07-08	3.3	4.01	3.43	3.7	0.013	0.92	0.0	0.17	16.89	0.00	0.008	16.12	0.52	3.0	97.0	0.0	-0.92	0.64	0.59	1.49	3.7	0.003	0.76	0.0	0.11	14.58	0.00	0.794	10.08	1.87	3.7	96.3	0.0	0.13	1.32	0.81	0.84	2.12	23615	2861	33	0	92	0	0	logfile
✔	6ZP5	11336	2024-04-11	2020-07-08	3.1	3.90	3.32	3.6	0.013	0.92	0.0	0.15	16.89	0.00	0.012	14.22	0.52	3.0	97.0	0.0	-0.93	0.67	0.64	2.54	3.6	0.003	0.75	0.0	0.11	14.46	0.00	0.792	9.01	1.63	3.6	96.4	0.0	0.31	0.67	0.82	0.84	2.06	23615	2861	33	0	92	0	0	logfile
✔	8UF0	42181	2024-04-12	2023-10-03	2.02	2.34	2.08	2.2	0.007	0.76	0.0	0.05	17.50	0.01	0.013	4.37	0.54	1.8	98.2	0.0	0.09	0.84	0.89	5.17	2.2	0.003	0.62	0.0	0.05	17.90	0.01	2.125	3.00	1.19	1.1	98.9	0.0	1.26	0.34	0.82	0.88	4.15	27000	3456	48	0	0	804	0	logfile
✔	7B0N	11969	2024-04-10	2020-11-20	3.7	3.22	3.70	3.2	0.018	1.20	0.0	0.45	16.45	0.01	0.019	3.79	0.07	5.5	94.4	0.1	-2.92	0.59	0.74	2.70	3.2	0.004	0.88	1.0	0.13	16.59	0.00	1.500	9.41	1.03	3.8	96.2	0.0	-0.16	2.49	0.60	0.75	2.25	129439	8092	62	0	38	0	64087	logfile
✔	5A1A	2984	2024-04-15	2015-04-29	2.2	2.04	2.58	2.5	0.009	1.21	0.0	0.04	13.18	0.01	0.020	14.13	1.03	3.9	95.5	0.6	-1.86	0.53	0.76	4.20	2.5	0.004	0.70	0.0	0.05	17.31	0.00	1.928	11.82	3.52	3.3	96.6	0.1	-0.62	0.59	0.53	0.79	4.08	33696	4088	12	0	20	776	0	logfile
✔	5ooL	3842	2024-04-15	2017-08-08	3.06	5.10	3.10	4.9	0.009	1.05	2.0	0.06	18.65	0.01	0.037	6.31	0.54	5.0	94.9	0.1	-3.52	0.77	0.61	0.86	4.9	0.005	0.91	1.0	0.05	21.01	0.01	1.050	29.75	4.96	6.5	93.4	0.0	-1.20	1.56	0.78	0.71	0.73	98998	8198	66	1497	124	0	0	logfile
✔	7PQU	13605	2024-04-07	2021-09-20	3.03	1.80	—	3.4	0.008	0.90	0.0	0.05	17.24	0.01	0.051	14.73	5.14	7.9	92.0	0.1	-3.95	0.77	0.80	2.84	3.5	0.003	0.60	0.0	0.04	16.70	0.01	2.236	9.43	3.37	5.7	94.3	0.0	-0.55	0.99	0.76	0.79	2.34	10798	1312	12	0	8	14	0	logfile
✔	6oiG	20077	2024-04-10	2019-04-09	3.8	5.08	—	5.0	0.011	1.45	2.0	0.07	24.98	0.01	0.087	53.69	1.20	15.9	83.9	0.2	-5.09	0.77	0.48	0.04	4.9	0.011	1.05	7.0	0.05	23.88	0.01	1.454	34.94	4.82	13.3	86.6	0.1	-2.73	3.09	0.89	0.86	0.13	129140	6757	48	3522	116	0	0	logfile
✔	5Li4	4052	2024-04-10	2016-07-14	4.2	5.13	—	4.0	0.053	3.07	114.0	0.34	14.44	0.02	0.111	93.07	2.94	14.0	79.1	6.9	-4.32	0.24	0.30	—	4.1	0.005	1.06	2.0	0.05	13.91	0.01	2.083	35.87	0.00	16.6	82.5	0.9	-3.94	4.20	0.34	0.59	—	20070	2562	6	0	0	0	0	logfile
✔	7XDi	33148	2024-04-05	2022-03-27	3.8	3.93	3.63	3.9	0.003	0.71	0.0	0.04	16.85	0.01	0.137	25.89	0.56	4.7	94.6	0.6	0.46	0.58	0.82	1.80	3.9	0.005	0.86	2.0	0.05	17.46	0.01	2.086	15.71	6.42	5.4	94.0	0.6	0.77	1.34	0.58	0.82	1.67	53669	6804	42	0	0	0	0	logfile
✔	7AQD	11864	2024-04-14	2020-10-21	3.1	3.48	—	3.2	0.005	1.09	11.0	0.05	23.95	0.01	0.152	6.41	1.12	5.2	94.5	0.3	-2.11	0.78	0.72	1.63	3.2	0.009	0.76	0.0	0.04	24.09	0.01	1.850	15.65	4.02	7.4	92.5	0.1	-1.30	2.50	0.90	0.90	1.90	94357	3543	32	3106	0	0	0	logfile
✔	6o9J	0661	2024-04-15	2019-03-14	3.9	3.92	—	3.9	0.006	1.25	25.0	0.10	24.37	0.01	0.154	55.29	23.17	26.6	58.7	14.7	-7.10	0.74	0.66	0.16	3.9	0.011	1.15	6.0	0.05	24.09	0.01	1.282	34.98	8.65	25.0	72.2	2.9	-4.91	1.31	0.80	0.77	0.18	142682	5731	53	4564	0	0	0	logfile
✔	5o09	3726	2024-04-09	2017-05-16	3.6	3.66	—	3.7	0.014	1.48	32.0	0.10	13.27	0.01	0.180	18.46	1.36	6.3	92.8	0.8	-4.52	0.53	0.60	0.71	3.6	0.004	0.78	0.0	0.04	16.81	0.00	2.086	19.51	3.37	5.5	94.5	0.0	-0.83	1.62	0.60	0.76	1.35	67424	8648	40	16	0	0	0	logfile
✔	5M32	4146	2024-04-11	2016-10-14	3.8	3.96	—	3.8	0.009	1.47	12.0	0.07	13.19	0.01	0.185	19.65	3.10	14.4	83.9	1.7	-5.42	0.81	0.79	1.92	3.8	0.003	0.83	0.0	0.04	14.85	0.00	1.829	15.52	3.37	10.5	89.2	0.3	-1.92	1.49	0.83	0.81	1.31	76085	10500	52	0	8	0	0	logfile

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