Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7A6A	11668	2024-04-12	2020-08-25	1.15	1.13	—	1.2	0.018	1.70	24.0	0.16	14.68	0.01	1.857	3.78	3.03	1.2	98.8	0.0	2.45	0.47	0.61	9.02	1.2	0.003	0.58	0.0	0.04	14.97	0.00	2.193	3.34	1.82	1.8	98.2	0.0	4.63	0.40	0.69	0.82	8.90	41613	4152	72	0	32	4621	0	logfile
✔	7RRP	24665	2024-04-10	2021-08-10	1.27	1.32	—	1.4	0.003	0.61	0.0	0.04	14.22	0.00	2.007	2.86	0.00	2.4	97.6	0.0	4.01	0.63	0.76	9.05	1.4	0.004	0.66	0.0	0.04	14.32	0.00	2.044	2.00	0.61	1.8	98.2	0.0	3.97	0.06	0.70	0.83	9.05	72254	4128	72	0	278	2496	34080	logfile
✔	7A6B	11669	2024-04-12	2020-08-25	1.33	1.21	—	1.3	0.015	1.60	24.0	0.12	16.78	0.01	1.893	4.97	4.17	1.2	98.8	0.0	2.52	0.52	0.65	9.13	1.3	0.002	0.60	0.0	0.04	14.49	0.00	2.224	2.85	1.79	1.8	98.2	0.0	4.85	0.38	0.75	0.86	9.05	41494	4152	72	0	32	3854	0	logfile
✔	6Z9F	11122	2024-04-12	2020-06-03	1.56	1.61	1.61	1.6	0.015	1.74	48.0	0.10	15.51	0.01	1.782	5.46	3.66	1.7	98.3	0.0	2.70	0.68	0.69	8.63	1.6	0.003	0.61	0.0	0.04	15.04	0.00	2.187	3.77	2.46	1.8	98.2	0.0	4.81	0.92	0.84	0.86	8.53	41020	4152	72	0	32	4172	0	logfile
✔	7KoD	22972	2024-04-09	2020-11-08	1.655	2.30	—	1.9	0.001	0.33	0.0	0.03	8.49	0.00	2.288	0.80	0.00	1.1	98.9	0.0	6.14	0.91	0.91	8.16	2.0	0.005	0.50	0.0	0.04	13.83	0.00	1.855	2.71	0.25	0.6	99.4	0.0	5.20	0.58	0.87	0.93	8.06	68186	4128	48	0	0	1727	32643	logfile
✔	8EMQ	28259	2024-04-10	2022-09-28	1.66	1.59	1.68	1.6	0.011	1.31	0.0	0.07	15.25	0.01	0.733	5.98	1.91	0.6	99.4	0.0	2.37	0.66	0.78	9.05	1.6	0.003	0.59	0.0	0.04	14.39	0.00	2.083	3.47	0.64	1.2	98.8	0.0	5.32	0.38	0.81	0.89	8.89	37805	4128	72	0	30	2975	0	logfile
✔	7UUR	26801	2024-04-08	2022-04-28	1.67	1.76	1.67	1.8	0.061	2.45	3.0	0.98	14.57	0.01	1.674	7.19	0.44	2.5	97.2	0.2	-0.89	0.76	0.87	7.87	1.8	0.006	2.39	0.0	0.09	14.61	0.00	1.579	11.53	0.36	2.1	97.9	0.0	0.34	0.28	0.76	0.87	7.62	13683	1668	12	0	18	603	0	logfile
✔	8EN7	28269	2024-04-10	2022-09-28	1.68	1.48	1.71	1.6	0.012	1.29	0.0	0.07	15.67	0.01	0.731	8.76	1.27	1.2	98.8	0.0	2.40	0.61	0.75	8.54	1.6	0.002	0.54	0.0	0.04	15.27	0.00	2.235	4.30	0.63	1.2	98.8	0.0	5.30	0.41	0.75	0.85	7.89	37614	4128	54	0	6	2544	0	logfile
✔	7EFC	31083	2024-04-05	2021-03-21	1.7	1.76	1.76	1.9	0.032	3.16	16.0	0.09	14.88	0.02	0.001	2.15	2.15	2.5	96.6	0.8	-0.84	0.75	0.84	6.42	1.9	0.006	0.87	0.0	0.05	14.55	0.01	1.768	10.33	0.54	3.8	96.2	0.0	0.14	0.88	0.80	0.85	6.64	4004	480	4	0	4	156	0	logfile
✔	8P79	17522	2024-04-05	2023-05-30	1.7	1.76	1.73	1.8	0.014	1.73	0.0	0.08	14.30	0.01	2.251	3.34	0.90	2.1	97.7	0.2	-1.48	0.63	0.75	6.80	1.8	0.003	0.62	0.0	0.04	15.73	0.00	2.167	5.41	0.36	1.3	98.5	0.2	1.54	1.16	0.68	0.77	6.38	5256	630	6	0	1	180	0	logfile
✔	7A5V	11657	2024-04-11	2020-08-22	1.7	1.73	1.69	1.8	0.014	1.59	0.0	0.09	14.87	0.02	0.000	2.35	0.48	2.2	97.8	0.0	-0.05	0.61	0.79	6.90	1.8	0.002	0.61	0.0	0.05	13.88	0.00	0.000	4.57	0.57	0.5	99.5	0.0	2.01	0.35	0.71	0.86	6.31	21155	2275	30	0	85	1015	0	logfile
✔	8Q98	18271	2024-04-06	2023-08-20	1.75	1.75	1.77	1.8	0.011	1.66	0.0	0.07	9.83	0.01	2.543	0.00	0.00	0.5	99.5	0.0	-0.80	0.22	0.65	8.64	1.8	0.002	0.49	0.0	0.05	13.57	0.00	2.336	2.28	0.51	0.2	99.8	0.0	-0.44	0.91	0.43	0.90	7.94	7032	450	6	0	0	0	3588	logfile
✔	8CPX	16789	2024-04-15	2023-03-03	1.76	1.61	1.78	1.6	0.005	0.80	0.0	0.06	14.97	0.01	2.063	5.37	0.00	1.0	99.0	0.0	2.18	0.75	0.81	8.02	1.6	0.003	0.65	0.0	0.04	15.93	0.00	2.149	4.02	1.31	1.2	98.8	0.0	3.96	0.38	0.79	0.85	7.66	35827	4152	72	0	38	1709	0	logfile
✔	8CPU	16786	2024-04-15	2023-03-03	1.76	1.54	1.80	1.6	0.004	0.71	0.0	0.05	14.91	0.01	1.976	4.95	0.00	1.0	99.0	0.0	2.29	0.71	0.77	8.55	1.6	0.003	0.53	0.0	0.04	15.47	0.00	2.115	4.47	0.30	1.8	98.2	0.0	4.56	0.31	0.73	0.80	8.29	35823	4152	72	0	38	1705	0	logfile
✔	8CPV	16787	2024-04-15	2023-03-03	1.76	1.73	1.80	1.7	0.006	0.91	0.0	0.07	14.41	0.01	2.182	2.58	0.00	1.0	99.0	0.0	2.15	0.78	0.84	8.93	1.7	0.002	0.49	0.0	0.03	14.99	0.00	2.274	3.00	0.00	1.8	98.2	0.0	4.87	1.19	0.81	0.87	8.51	35855	4152	72	0	38	1737	0	logfile
✔	7ZG7	14705	2024-04-16	2022-04-02	1.77	1.79	1.79	1.8	0.004	0.74	0.0	0.04	14.44	0.01	1.952	3.06	0.00	1.8	98.2	0.0	3.49	0.77	0.86	9.05	1.8	0.004	0.69	0.0	0.04	15.33	0.00	1.997	3.32	0.37	2.4	97.6	0.0	4.81	0.71	0.79	0.88	9.05	39086	4128	72	0	382	2680	0	logfile
✔	8CPT	16785	2024-04-15	2023-03-03	1.79	1.72	1.81	1.8	0.004	0.72	0.0	0.05	15.65	0.01	2.157	1.26	0.49	1.0	99.0	0.0	2.30	0.80	0.85	8.36	1.8	0.003	0.59	0.0	0.04	16.52	0.00	2.197	1.43	2.21	1.8	98.2	0.0	4.12	0.32	0.81	0.87	8.14	36024	4152	72	0	38	1906	0	logfile
✔	8CPW	16788	2024-04-15	2023-03-03	1.79	1.64	1.78	1.7	0.005	0.84	0.0	0.06	14.35	0.01	2.180	3.39	0.63	1.0	99.0	0.0	2.13	0.77	0.83	8.34	1.6	0.003	0.66	0.0	0.04	14.70	0.00	2.220	4.01	0.65	1.2	98.8	0.0	4.15	0.23	0.77	0.85	7.80	36004	4152	72	0	38	1886	0	logfile
✔	5K12	8194	2024-04-08	2016-05-17	1.8	2.40	—	2.8	0.008	0.97	0.0	0.06	10.27	0.01	2.051	19.79	0.82	3.8	96.2	0.0	-2.53	0.66	0.74	5.80	2.8	0.004	0.58	0.0	0.04	15.60	0.01	2.082	10.13	0.68	1.9	98.1	0.0	1.95	0.87	0.72	0.89	3.67	14856	1764	12	0	0	1086	0	logfile
✔	8P77	17520	2024-04-05	2023-05-30	1.8	1.83	1.92	1.9	0.006	0.58	0.0	0.04	16.68	0.00	2.228	5.35	1.08	1.3	98.5	0.2	2.01	0.68	0.79	5.73	1.9	0.003	0.57	0.0	0.04	16.88	0.00	2.152	6.32	1.99	1.3	98.5	0.2	1.69	0.72	0.68	0.80	5.84	5271	630	7	0	2	137	0	logfile

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