Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GS3	34219	2024-04-09	2022-09-04	3.9	3.16	3.68	3.0	0.013	1.32	0.0	0.05	15.90	0.01	1.810	20.53	0.00	3.5	96.5	0.0	0.27	0.83	0.75	1.57	3.0	0.013	1.32	0.0	0.05	15.94	0.01	1.812	21.50	0.11	3.5	96.5	0.0	0.27	0.05	0.83	0.76	1.57	8376	1067	2	0	0	0	0	logfile
✔	7RRP	24665	2024-04-10	2021-08-10	1.27	1.32	—	1.4	0.003	0.61	0.0	0.04	14.22	0.00	2.007	2.86	0.00	2.4	97.6	0.0	4.01	0.63	0.76	9.05	1.4	0.004	0.66	0.0	0.04	14.32	0.00	2.044	2.00	0.61	1.8	98.2	0.0	3.97	0.06	0.70	0.83	9.05	72254	4128	72	0	278	2496	34080	logfile
✔	7R6L	24281	2024-04-06	2021-06-22	2.85	3.04	—	3.0	0.008	0.89	0.0	0.05	25.02	0.01	1.985	4.24	0.00	0.0	0.0	0.0	—	0.67	0.86	—	3.0	0.006	0.74	0.0	0.04	24.59	0.01	1.877	7.46	0.00	0.0	0.0	0.0	—	0.08	0.62	0.86	—	7857	0	3	366	20	0	0	logfile
✔	8P73	17516	2024-04-05	2023-05-30	2.0	1.72	2.01	1.9	0.005	0.66	0.0	0.25	18.35	0.01	2.182	8.37	1.45	1.5	98.4	0.2	1.44	0.63	0.76	4.88	1.9	0.003	0.90	0.0	0.11	17.56	0.00	2.134	7.58	0.73	1.3	98.5	0.2	1.68	0.09	0.63	0.76	4.75	5169	626	7	0	3	67	0	logfile
✔	8P74	17517	2024-04-05	2023-05-30	2.2	2.04	2.20	2.1	0.004	0.70	0.0	0.04	16.53	0.00	2.196	8.79	0.91	1.5	98.4	0.2	1.79	0.63	0.80	5.22	2.1	0.004	0.63	0.0	0.04	16.79	0.01	2.199	9.19	1.64	1.3	98.5	0.2	1.48	0.11	0.62	0.80	5.20	5115	626	7	0	2	44	0	logfile
✔	8HNU	34918	2024-04-09	2022-12-08	2.28	2.97	2.29	2.7	0.003	0.45	0.0	0.04	16.20	0.00	2.170	3.11	1.52	2.0	97.9	0.1	1.07	0.85	0.90	4.54	2.7	0.005	0.71	2.0	0.05	16.18	0.00	1.964	3.56	0.58	2.4	97.5	0.1	0.93	0.12	0.85	0.91	4.77	16178	1970	6	0	4	316	0	logfile
✔	8QFD	18382	2024-04-09	2023-09-04	2.2	2.62	2.28	2.5	0.004	0.60	0.0	0.04	22.98	0.00	1.804	2.04	0.95	1.6	98.4	0.0	0.87	0.77	0.90	5.55	2.5	0.005	0.64	0.0	0.04	22.63	0.01	1.877	2.44	1.12	1.3	98.7	0.0	0.99	0.12	0.77	0.90	5.51	125372	6253	97	3393	166	2164	0	logfile
✔	7T2E	25611	2024-04-05	2021-12-03	2.7	3.14	—	3.0	0.003	0.54	0.0	0.04	16.11	0.00	2.242	1.92	1.18	0.3	99.7	0.0	0.14	0.34	0.84	5.04	3.0	0.002	0.48	0.0	0.04	16.27	0.00	2.223	2.35	2.36	0.6	99.4	0.0	0.37	0.12	0.36	0.86	4.66	2390	312	2	0	0	0	0	logfile
✔	8G6G	29767	2024-04-08	2023-02-15	2.93	3.16	2.92	3.1	0.003	0.57	0.0	0.04	28.34	0.00	2.238	4.36	1.16	2.1	97.9	0.0	2.83	0.86	0.86	2.41	3.1	0.004	0.55	0.0	0.03	28.33	0.00	2.267	4.10	2.18	2.0	98.0	0.0	2.63	0.13	0.88	0.89	2.52	12985	825	11	314	0	0	0	logfile
✔	8H2T	34443	2024-04-08	2022-10-07	2.59	3.14	2.68	3.0	0.003	0.59	0.0	0.04	16.32	0.00	2.043	5.51	1.52	3.0	96.9	0.1	0.43	0.76	0.86	4.68	3.0	0.003	0.56	0.0	0.04	16.46	0.00	2.067	5.62	1.78	2.8	97.0	0.2	0.47	0.13	0.76	0.86	4.42	14370	1776	9	0	9	0	0	logfile
✔	8HoB	34924	2024-04-08	2022-12-09	2.19	2.69	2.23	2.6	0.008	0.75	4.0	0.07	17.24	0.00	2.230	3.31	1.23	3.1	96.9	0.0	0.68	0.66	0.85	5.42	2.6	0.003	0.55	0.0	0.05	17.31	0.00	2.189	3.31	1.66	3.3	96.7	0.0	0.69	0.13	0.73	0.89	5.59	13449	1622	4	0	0	333	0	logfile
✔	8BKB	16095	2024-04-15	2022-11-08	2.2	1.97	2.09	2.0	0.003	0.61	0.0	0.04	17.88	0.00	2.225	1.59	1.40	1.4	98.6	0.0	4.82	0.71	0.86	6.67	2.0	0.005	0.68	0.0	0.04	17.67	0.01	2.092	3.51	2.00	1.8	98.2	0.0	4.47	0.14	0.71	0.87	7.13	35139	4128	54	0	6	1317	0	logfile
✔	8Ho8	34922	2024-04-08	2022-12-09	2.24	2.63	2.22	2.6	0.003	0.59	0.0	0.05	17.23	0.00	2.278	2.79	1.30	3.3	96.7	0.0	0.44	0.73	0.89	5.92	2.6	0.003	0.59	0.0	0.05	17.28	0.00	2.232	2.83	2.10	3.4	96.6	0.0	0.57	0.14	0.77	0.90	5.66	13454	1618	6	0	4	309	0	logfile
✔	8iHR	35453	2024-04-12	2023-02-23	2.5	2.65	2.53	2.7	0.004	0.67	0.0	0.05	15.87	0.00	2.138	4.14	0.70	2.8	97.2	0.0	-0.52	0.74	0.89	4.49	2.7	0.002	0.52	0.0	0.04	16.25	0.00	2.070	3.62	1.57	1.8	98.2	0.0	-0.17	0.14	0.74	0.89	4.21	24224	3200	16	0	16	0	0	logfile
✔	8PSo	17858	2024-04-09	2023-07-13	2.4	2.34	2.37	2.4	0.003	0.56	0.0	0.04	18.69	0.00	1.693	2.47	1.55	2.1	97.9	0.0	1.47	0.74	0.88	4.68	2.4	0.002	0.50	0.0	0.04	18.01	0.00	1.861	2.47	1.07	1.9	98.1	0.0	1.17	0.15	0.73	0.89	4.78	16201	971	13	28	4	44	7937	logfile
✔	8JiV	36331	2024-04-07	2023-05-28	2.84	2.46	2.62	2.6	0.010	0.82	0.0	0.04	24.18	0.03	1.858	6.57	3.34	4.2	95.8	0.0	-0.83	0.74	0.85	3.85	2.6	0.004	0.86	0.0	0.04	24.05	0.01	1.870	6.75	3.06	4.3	95.7	0.0	0.04	0.15	0.74	0.85	3.82	116711	6191	58	3134	317	0	0	logfile
✔	8Ho7	34921	2024-04-08	2022-12-09	2.59	2.93	2.60	2.9	0.002	0.53	0.0	0.04	17.79	0.00	2.118	4.39	2.31	3.6	96.4	0.0	0.25	0.71	0.91	5.15	2.9	0.003	0.55	0.0	0.04	17.82	0.00	2.139	4.86	2.31	3.4	96.6	0.0	0.35	0.15	0.64	0.88	5.09	13227	1620	4	0	0	112	0	logfile
✔	7TYJ	26181	2024-04-05	2022-02-13	3.3	3.29	3.45	3.3	0.004	0.62	0.0	0.05	16.63	0.00	2.161	9.16	0.44	10.3	89.6	0.1	-1.90	0.67	0.83	3.05	3.3	0.002	0.59	0.0	0.04	16.94	0.00	2.233	8.76	2.91	9.5	90.3	0.1	-1.97	0.15	0.66	0.82	3.07	6338	808	2	0	0	0	0	logfile
✔	8GCC	29930	2024-04-11	2023-03-01	2.94	3.15	2.96	3.1	0.007	1.04	0.0	0.04	20.02	0.00	1.942	4.30	2.54	3.6	96.4	0.0	1.52	0.73	0.85	3.48	3.1	0.004	0.74	0.0	0.04	19.90	0.00	1.934	4.48	1.62	3.9	96.1	0.0	1.56	0.16	0.68	0.83	3.27	22336	1414	6	48	2	0	10631	logfile
✔	8BKA	16094	2024-04-15	2022-11-08	2.7	2.53	2.80	2.6	0.003	0.56	0.0	0.04	18.73	0.00	2.186	3.28	1.64	1.9	98.1	0.0	4.05	0.68	0.89	4.89	2.6	0.006	0.63	0.0	0.04	19.16	0.00	2.082	6.67	4.03	2.2	97.8	0.0	4.96	0.16	0.69	0.90	4.96	36093	4128	54	0	6	2271	0	logfile

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