Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WQG	37744	2024-04-15	2023-10-11	4.09	4.33	4.11	4.2	0.003	0.60	0.0	0.04	14.75	0.00	2.082	10.99	0.03	6.6	93.4	0.0	-0.87	0.79	0.74	—	4.2	0.007	0.81	0.0	0.05	14.58	0.00	1.925	24.20	0.00	7.8	92.0	0.1	-0.96	1.38	0.80	0.74	—	26832	3393	14	0	6	0	0	logfile
✔	8AFL	15401	2024-04-05	2022-07-18	4.4	3.03	4.24	2.2	0.004	0.74	0.0	0.04	15.27	0.00	2.153	18.68	0.25	8.4	91.6	0.0	-3.48	0.59	0.59	—	2.1	0.004	0.73	0.0	0.04	15.42	0.00	2.158	16.25	0.00	6.5	93.5	0.0	-1.48	0.80	0.59	0.59	—	3921	505	6	0	0	0	0	logfile
✔	8EX8	28654	2024-04-05	2022-10-24	4.17	4.37	4.02	4.3	0.007	0.96	0.0	0.05	14.00	0.01	2.138	20.49	0.00	5.1	94.9	0.0	-0.72	0.56	0.74	—	4.4	0.003	0.64	0.0	0.04	14.24	0.00	2.179	13.50	0.00	2.7	97.3	0.0	1.19	0.54	0.53	0.71	—	3177	414	1	0	0	0	0	logfile
✔	8HAE	34586	2024-04-12	2022-10-26	4.55	4.75	4.64	4.6	0.009	1.04	0.0	0.07	10.84	0.01	1.994	6.14	0.27	8.3	91.7	0.0	-3.55	0.81	0.75	—	4.6	0.002	0.71	4.0	0.12	11.72	0.00	1.940	7.61	0.00	6.5	93.5	0.0	-1.80	1.33	0.80	0.74	—	26698	1690	2	0	0	0	13272	logfile
✔	8AFM	15402	2024-04-06	2022-07-18	4.8	3.13	4.72	3.9	0.004	0.74	0.0	0.04	15.27	0.00	2.153	18.43	0.25	8.2	91.8	0.0	-3.48	0.46	0.51	—	3.0	0.003	0.73	0.0	0.04	15.59	0.00	2.101	13.44	0.00	4.0	96.0	0.0	-0.87	2.12	0.48	0.56	—	7842	1010	12	0	0	0	0	logfile
✔	8GAo	29902	2024-04-11	2023-02-23	4.1	2.86	—	3.7	0.003	0.59	0.0	0.04	12.63	0.00	1.924	12.62	3.47	5.5	94.5	0.0	0.19	0.79	0.76	—	3.8	0.004	0.70	0.0	0.04	13.60	0.00	1.870	18.72	0.00	6.1	93.9	0.0	-0.28	1.27	0.78	0.76	—	23987	2931	16	23	12	0	0	logfile
✔	7Y6N	33644	2024-04-05	2022-06-21	4.4	3.58	4.16	4.0	0.003	0.84	0.0	0.05	12.98	0.01	2.222	15.34	0.00	12.1	87.9	0.0	-2.77	0.46	0.56	—	3.6	0.003	0.85	0.0	0.05	13.68	0.00	2.167	14.88	0.00	13.1	86.9	0.0	-2.97	0.76	0.52	0.63	—	3327	426	4	0	1	0	0	logfile
✔	8GH8	40036	2024-04-06	2023-03-09	4.3	4.08	3.85	4.0	0.004	0.79	0.0	0.05	26.60	0.01	2.219	10.05	0.23	12.7	86.8	0.5	-3.65	0.48	0.44	—	4.0	0.003	0.70	0.0	0.04	26.10	0.01	2.195	8.82	0.00	12.0	87.8	0.2	-3.87	1.06	0.51	0.47	—	6991	559	8	136	0	0	0	logfile
✔	8BYi	16326	2024-04-08	2022-12-13	4.1	3.68	3.94	4.0	0.009	0.72	0.0	0.21	12.07	0.00	2.132	24.08	0.00	2.3	97.7	0.0	1.89	0.61	0.78	—	3.7	0.003	0.62	0.0	0.04	11.52	0.00	2.230	12.03	0.00	4.0	96.0	0.0	-0.32	1.14	0.64	0.80	—	13031	1600	15	0	12	9	0	logfile
✔	8BYQ	16331	2024-04-13	2022-12-14	4.1	4.99	4.14	3.3	0.005	0.87	0.0	0.05	16.32	0.01	1.408	6.80	0.06	3.0	97.0	0.0	-0.60	0.83	0.67	—	3.2	0.003	0.59	0.0	0.04	17.48	0.00	1.743	13.84	0.00	2.8	97.2	0.0	0.97	1.60	0.85	0.72	—	85971	9841	52	396	18	0	0	logfile
✔	8oSL	17160	2024-04-08	2023-04-19	4.9	8.34	6.27	6.8	0.005	0.80	0.0	0.05	28.01	0.00	2.363	2.30	0.00	1.1	98.9	0.0	-0.07	0.81	0.71	—	7.0	0.012	1.04	0.0	0.06	35.58	0.01	1.810	186.47	0.00	13.0	86.5	0.5	-2.30	3.51	0.87	0.83	—	13541	1441	14	294	0	0	301	logfile
✔	8J5Z	35996	2024-04-12	2023-04-24	4.75	4.34	4.69	4.2	0.002	0.47	0.0	0.04	12.56	0.00	2.224	6.20	3.96	5.1	94.9	0.0	-0.77	0.80	0.75	—	4.2	0.002	0.59	0.0	0.04	11.52	0.00	2.211	9.83	0.00	5.7	94.3	0.0	-0.97	1.35	0.81	0.75	—	24856	3056	8	0	4	0	0	logfile
✔	7WBV	32407	2024-04-14	2021-12-17	4.1	4.41	—	4.0	0.004	0.62	0.0	0.04	18.95	0.00	1.842	12.31	0.00	5.9	94.1	0.1	-0.61	0.80	0.73	—	4.0	0.004	0.63	0.0	0.04	19.33	0.00	1.847	14.41	0.00	8.6	91.3	0.1	-1.22	0.48	0.80	0.72	—	92340	5125	34	329	11	0	44823	logfile
✔	7YN0	33949	2024-04-13	2022-07-29	4.1	4.36	4.06	4.2	0.005	0.83	6.0	0.06	18.73	0.01	2.218	5.68	0.30	5.1	94.7	0.2	-0.74	0.84	0.79	—	4.2	0.003	0.67	0.0	0.04	15.42	0.00	2.100	12.70	0.00	6.2	93.8	0.0	-0.61	1.61	0.85	0.81	—	27912	3498	21	0	63	0	0	logfile
✔	7YMX	33946	2024-04-13	2022-07-29	4.44	8.52	4.33	4.6	0.004	0.83	2.0	0.05	15.81	0.01	2.240	7.67	0.33	5.9	94.1	0.1	-1.19	0.89	0.80	—	4.6	0.004	0.68	0.0	0.04	14.09	0.00	2.043	26.02	0.00	7.5	92.5	0.0	-0.95	1.24	0.92	0.74	—	27775	3498	18	0	53	0	0	logfile
✔	8GP3	34188	2024-04-07	2022-08-25	4.8	5.31	4.80	4.9	0.004	0.65	0.0	0.04	13.23	0.00	2.102	10.90	0.00	3.4	96.6	0.0	0.13	0.87	0.81	—	4.9	0.002	0.59	0.0	0.04	13.25	0.00	2.151	12.14	0.00	3.4	96.6	0.0	-0.19	1.02	0.87	0.82	—	11494	1522	8	0	0	0	0	logfile
✔	8oDV	16819	2024-04-06	2023-03-09	4.7	4.86	4.41	4.7	0.007	1.10	0.0	0.05	14.06	0.01	2.192	25.76	0.00	4.6	95.4	0.0	-4.04	0.71	0.79	—	4.7	0.003	0.75	0.0	0.04	13.98	0.00	2.161	13.18	0.00	3.3	96.7	0.0	0.51	1.46	0.71	0.79	—	8233	1022	5	0	1	0	0	logfile
✔	8GoC	34175	2024-04-09	2022-08-24	4.18	4.50	4.20	4.3	0.004	0.75	0.0	0.05	13.29	0.00	2.249	13.10	0.05	4.8	95.1	0.2	-0.10	0.81	0.81	—	4.3	0.004	0.70	0.0	0.05	13.40	0.00	2.133	16.55	0.00	7.4	92.6	0.0	-0.63	0.43	0.82	0.82	—	16942	2223	12	0	0	0	0	logfile
✔	7YC8	33736	2024-04-06	2022-07-01	4.14	7.25	4.31	4.1	0.002	0.51	0.0	0.02	25.12	0.00	2.079	18.05	0.00	0.0	0.0	0.0	—	0.96	0.87	—	4.1	0.006	0.81	0.0	0.04	27.57	0.01	1.977	68.78	0.00	0.0	0.0	0.0	—	1.24	0.97	0.89	—	8335	0	1	388	1	0	0	logfile
✔	6QJQ	4566	2024-04-05	2019-01-24	3.7	3.99	2.14	4.1	0.021	1.17	0.0	0.11	13.36	0.01	2.499	5.58	0.00	4.0	94.0	2.0	-4.41	0.39	0.75	2.60	4.1	0.003	0.74	0.0	0.05	14.32	0.00	2.354	7.97	0.00	6.0	94.0	0.0	-2.75	1.23	0.37	0.74	1.67	1218	162	6	0	0	0	0	logfile

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