Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6XJB	22205	2024-04-07	2020-06-23	3.8	4.06	—	3.9	0.002	0.56	0.0	0.04	13.11	0.00	2.165	9.70	0.00	8.6	91.4	0.0	-3.06	0.88	0.82	1.76	3.9	0.003	0.63	0.0	0.04	15.36	0.00	2.083	12.82	4.27	7.5	92.5	0.0	-1.34	1.82	0.88	0.85	1.85	10070	1277	1	0	0	0	0	logfile
✔	5oJS	3824	2024-04-13	2017-07-24	3.7	3.84	—	3.7	0.007	1.43	0.0	0.07	13.41	0.01	2.211	8.29	2.09	14.8	84.6	0.6	-5.58	0.80	0.75	1.62	3.7	0.004	0.90	0.0	0.05	16.22	0.01	2.111	15.91	3.62	13.4	86.5	0.2	-1.91	0.75	0.81	0.75	0.83	28407	3473	1	0	0	0	0	logfile
✔	7W84	32351	2024-04-09	2021-12-07	3.4	2.66	—	3.4	0.004	0.74	1.0	0.05	16.68	0.00	1.982	18.13	7.85	12.9	87.0	0.1	-3.60	0.79	0.78	1.21	3.5	0.006	1.14	1.0	0.06	18.07	0.01	1.676	23.16	5.04	9.8	90.2	0.0	-1.80	0.53	0.80	0.79	1.44	7879	995	1	0	0	0	0	logfile
✔	7Si3	25137	2024-04-08	2021-10-12	3.19	3.21	—	3.2	0.003	1.19	0.0	0.04	13.00	0.00	2.038	2.15	0.00	1.5	98.5	0.0	3.72	0.48	0.77	1.74	3.1	0.003	0.86	0.0	0.04	14.43	0.00	1.918	4.07	0.55	2.6	97.4	0.0	2.03	0.94	0.51	0.82	2.32	13500	873	1	0	2	0	6901	logfile
✔	8HJ9	34835	2024-04-05	2022-11-22	3.12	3.29	3.00	3.2	0.004	0.65	0.0	0.04	16.74	0.00	2.234	10.94	0.00	2.7	97.3	0.0	1.80	0.43	0.76	3.45	3.2	0.002	0.49	0.0	0.04	16.17	0.00	2.217	11.09	1.82	2.9	97.1	0.0	1.75	1.99	0.43	0.78	2.83	3274	416	1	0	1	0	0	logfile
✔	5YWD	6853	2024-04-06	2017-11-29	4.2	4.38	4.11	4.2	0.003	0.73	0.0	0.04	14.12	0.00	2.031	12.08	6.20	4.1	95.9	0.0	-1.54	0.62	0.74	—	4.2	0.003	0.75	0.0	0.04	13.44	0.00	1.935	14.55	0.00	4.0	95.9	0.1	1.10	1.81	0.65	0.77	—	8997	1154	1	0	4	0	0	logfile
✔	8HiZ	34830	2024-04-05	2022-11-22	3.08	3.26	2.97	3.2	0.004	0.70	0.0	0.04	16.64	0.00	2.324	14.33	0.30	2.9	97.1	0.0	1.51	0.40	0.77	2.44	3.2	0.003	0.63	0.0	0.04	16.53	0.00	2.132	13.40	1.52	4.1	95.9	0.0	0.88	1.06	0.40	0.80	2.29	3274	416	1	0	1	0	0	logfile
✔	7AWA	11928	2024-04-05	2020-11-06	3.5	3.83	—	3.6	0.003	0.64	0.0	0.04	14.22	0.00	2.126	6.77	0.00	5.8	94.2	0.0	-2.52	0.57	0.81	2.14	3.6	0.003	0.50	0.0	0.04	15.16	0.00	2.159	7.52	0.34	4.6	95.4	0.0	-0.74	1.17	0.54	0.81	1.66	5310	328	1	0	0	0	2703	logfile
✔	8HJ3	34831	2024-04-05	2022-11-22	3.29	3.43	3.19	3.3	0.005	0.80	0.0	0.05	14.80	0.01	2.200	16.79	0.30	3.6	96.4	0.0	1.21	0.46	0.76	2.55	3.3	0.004	0.69	0.0	0.05	16.01	0.00	2.192	16.18	3.64	3.4	96.6	0.0	0.82	0.38	0.47	0.79	2.05	3274	416	1	0	1	0	0	logfile
✔	7BWM	30233	2024-04-10	2020-04-15	2.9	2.97	—	2.9	0.005	0.78	0.0	0.05	14.24	0.00	2.048	7.32	7.21	5.8	94.0	0.3	-3.28	0.76	0.85	4.49	2.9	0.002	0.60	0.0	0.04	15.34	0.00	2.137	6.73	2.53	5.0	95.0	0.0	-0.90	0.88	0.78	0.87	3.45	9532	1219	1	0	0	0	0	logfile
✔	6V6C	21068	2024-04-05	2019-12-04	4.5	4.50	—	4.4	0.003	0.55	0.0	0.04	13.78	0.00	2.226	7.10	0.00	5.1	94.9	0.0	-4.56	0.42	0.82	—	4.4	0.003	0.64	0.0	0.04	14.31	0.00	2.216	5.60	0.00	5.5	94.5	0.0	-0.07	2.01	0.42	0.81	—	4007	497	1	0	0	0	0	logfile
✔	8HHo	34805	2024-04-05	2022-11-16	3.2	3.36	3.02	3.3	0.005	0.76	0.0	0.05	15.65	0.01	2.169	14.02	0.30	2.2	97.8	0.0	1.56	0.46	0.78	2.53	3.3	0.003	0.58	0.0	0.04	16.31	0.00	2.137	14.64	2.42	2.4	97.6	0.0	1.54	0.39	0.47	0.80	2.08	3274	416	1	0	1	0	0	logfile
✔	5A22	6337	2024-04-14	2015-05-06	3.8	4.20	—	4.2	0.009	1.49	0.0	0.06	15.75	0.01	2.014	14.11	5.57	13.9	84.2	2.0	-5.08	0.72	0.82	1.68	4.2	0.003	0.73	0.0	0.04	16.79	0.01	1.850	17.31	3.57	12.7	86.3	1.0	-1.43	2.65	0.68	0.75	1.23	32187	2002	1	0	2	0	16110	logfile
✔	7ZH0	14716	2024-04-05	2022-04-05	3.2	3.63	3.07	3.5	0.004	0.72	0.0	0.04	13.97	0.01	2.191	14.27	0.24	6.0	94.0	0.0	1.08	0.65	0.75	3.58	3.5	0.004	0.66	0.0	0.04	16.36	0.00	2.216	13.25	4.65	5.7	94.3	0.0	1.15	0.48	0.67	0.77	2.86	3869	495	1	0	0	0	0	logfile
✔	7PAG	13269	2024-04-05	2021-07-29	4.0	4.22	—	4.1	0.005	0.75	0.0	0.05	13.81	0.01	2.177	12.66	0.00	6.3	93.7	0.0	-1.70	0.30	0.60	—	4.2	0.004	1.01	0.0	0.05	16.56	0.00	2.166	19.75	3.20	9.1	90.9	0.0	-3.22	1.27	0.33	0.68	—	4040	509	1	0	4	0	0	logfile
✔	7XUN	33475	2024-04-05	2022-05-19	3.4	3.91	3.41	3.8	0.002	0.57	0.0	0.04	13.72	0.00	2.129	11.02	0.00	4.1	95.9	0.0	-0.92	0.72	0.76	0.33	3.8	0.004	0.68	0.0	0.05	15.88	0.00	2.137	13.82	2.77	5.2	94.8	0.0	-0.25	1.11	0.73	0.78	0.26	5591	741	1	0	0	0	0	logfile
✔	8HiQ	34826	2024-04-05	2022-11-21	3.2	3.35	3.10	3.3	0.005	0.74	0.0	0.04	17.06	0.01	2.284	14.48	0.00	3.9	96.1	0.0	1.52	0.43	0.77	2.29	3.3	0.003	0.59	0.0	0.04	16.85	0.01	2.255	13.87	1.21	4.3	95.7	0.0	1.60	1.05	0.43	0.78	2.15	3274	416	1	0	1	0	0	logfile
✔	7VH3	31985	2024-04-08	2021-09-20	3.6	3.70	—	3.7	0.005	1.09	0.0	0.06	11.49	0.01	2.257	7.95	0.90	8.5	91.0	0.4	-4.84	0.68	0.69	1.85	3.6	0.003	0.71	0.0	0.04	15.69	0.00	2.158	13.90	3.33	8.0	92.0	0.1	-1.43	1.66	0.70	0.73	1.07	12749	1612	1	0	0	0	0	logfile
✔	6iG9	9664	2024-04-09	2018-09-25	4.6	5.44	4.27	4.3	0.007	1.07	0.0	0.05	9.51	0.01	2.299	9.69	0.73	10.2	89.7	0.2	-3.99	0.69	0.65	—	4.2	0.003	0.66	0.0	0.04	5.17	0.00	2.218	2.46	0.00	9.7	90.3	0.0	0.91	1.56	0.87	0.72	—	17122	3386	1	0	0	0	0	logfile
✔	7ZH6	14725	2024-04-05	2022-04-05	3.67	4.10	0.95	4.2	0.006	0.90	0.0	0.06	15.91	0.01	1.607	26.36	1.26	6.4	93.6	0.0	0.99	0.54	0.73	1.36	4.2	0.004	0.71	0.0	0.04	16.90	0.00	2.203	15.14	6.80	6.4	93.6	0.0	1.06	1.11	0.54	0.75	1.16	3771	478	1	0	1	0	0	logfile

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