Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PUW	20483	2024-04-07	2019-07-18	2.9	3.21	2.93	3.1	0.013	0.77	0.0	0.04	20.01	0.00	0.000	7.69	0.20	2.1	97.9	0.0	-2.24	0.74	0.90	4.70	3.1	0.004	0.58	0.0	0.04	21.45	0.00	0.000	8.88	2.15	3.5	96.5	0.0	0.46	0.36	0.69	0.90	4.22	11116	1170	28	72	10	312	0	logfile
✔	8PVB	17960	2024-04-10	2023-07-17	3.6	3.05	3.14	3.2	0.010	1.70	0.0	0.09	16.05	0.01	0.000	1.17	1.27	1.6	98.4	0.0	-0.14	0.60	0.79	4.63	3.2	0.004	0.61	0.0	0.04	15.10	0.00	0.000	6.41	1.77	1.2	98.8	0.0	0.62	1.00	0.73	0.84	3.89	19225	2275	25	0	80	0	0	logfile
✔	7A5V	11657	2024-04-11	2020-08-22	1.7	1.73	1.69	1.8	0.014	1.59	0.0	0.09	14.87	0.02	0.000	2.35	0.48	2.2	97.8	0.0	-0.05	0.61	0.79	6.90	1.8	0.002	0.61	0.0	0.05	13.88	0.00	0.000	4.57	0.57	0.5	99.5	0.0	2.01	0.35	0.71	0.86	6.31	21155	2275	30	0	85	1015	0	logfile
✔	6PUT	20481	2024-04-07	2019-07-18	2.9	3.22	2.96	3.2	0.007	0.82	0.0	0.05	19.07	0.01	0.000	5.13	0.20	2.5	97.5	0.0	-3.43	0.73	0.90	4.56	3.2	0.003	0.54	0.0	0.04	20.57	0.00	0.000	8.58	2.02	2.0	98.0	0.0	0.73	0.88	0.65	0.89	4.05	10976	1170	28	68	8	308	0	logfile
✔	6SHT	10205	2024-04-16	2019-08-08	2.73	2.88	2.75	2.8	0.015	1.55	0.0	0.07	19.28	0.01	0.000	7.75	5.56	0.6	98.8	0.6	-2.82	0.81	0.91	3.74	2.8	0.003	0.55	0.0	0.04	19.44	0.00	0.000	4.10	3.19	1.8	97.8	0.3	5.24	1.77	0.72	0.85	2.06	37152	4176	24	0	48	1728	0	logfile
✔	6NJo	9390	2024-04-10	2019-01-03	3.34	3.42	—	3.4	0.010	1.20	1.0	0.07	11.62	0.01	1.361	5.89	0.49	7.1	92.9	0.0	-4.27	0.80	0.83	3.46	3.4	0.007	0.81	0.0	0.05	14.87	0.00	0.073	10.25	3.14	6.8	93.2	0.0	-1.49	0.47	0.83	0.86	2.69	19090	2466	14	0	12	20	0	logfile
✔	7K0T	22616	2024-04-07	2020-09-05	4.3	4.52	4.29	4.2	0.003	0.65	1.0	0.04	13.88	0.00	1.909	7.65	0.63	7.5	92.4	0.2	-0.19	0.84	0.76	—	4.2	0.036	2.69	57.0	0.11	15.92	0.02	0.366	109.75	0.00	43.4	55.0	1.6	-7.46	2.20	0.86	0.83	—	115905	12820	8	0	3608	0	0	logfile
✔	7URT	26718	2024-04-05	2022-04-22	2.39	2.51	2.52	2.5	0.008	0.96	0.0	0.07	13.99	0.01	0.512	6.62	1.60	0.9	99.1	0.0	1.22	0.71	0.82	4.21	2.5	0.037	3.41	17.0	0.29	25.51	0.01	0.387	10.75	2.97	1.5	98.5	0.0	1.74	1.11	0.69	0.81	2.97	107880	13260	60	0	120	0	0	logfile
✔	8EET	28057	2024-04-05	2022-09-07	3.1	3.36	3.21	3.4	0.007	0.92	0.0	0.06	12.42	0.00	0.312	9.93	1.07	0.5	99.5	0.0	1.87	0.72	0.82	3.55	3.4	0.036	2.63	0.0	0.28	22.74	0.00	0.540	13.15	1.66	1.3	98.7	0.0	2.02	1.33	0.68	0.83	3.02	107640	13260	60	0	120	0	0	logfile
✔	6NJP	9391	2024-04-10	2019-01-03	3.29	3.37	—	3.3	0.009	1.17	0.0	0.07	11.57	0.01	1.276	6.11	0.67	6.4	93.6	0.0	-4.04	0.81	0.83	3.41	3.3	0.003	0.67	0.0	0.04	14.80	0.00	0.646	8.58	2.34	4.6	95.4	0.0	-0.91	1.14	0.83	0.85	2.68	19607	2530	15	0	12	21	0	logfile
✔	7UMZ	26610	2024-04-06	2022-04-08	3.09	3.37	3.21	3.3	0.004	0.87	0.0	0.04	17.67	0.01	2.198	7.00	2.38	6.1	93.3	0.6	-1.01	0.68	0.70	1.58	3.3	0.060	2.96	149.0	0.19	20.93	0.02	0.739	52.46	23.20	26.6	70.8	2.6	-6.91	1.64	0.75	0.86	2.22	111437	12516	12	0	3221	8	0	logfile
✔	8A1X	15092	2024-04-13	2022-06-02	3.2	3.01	3.27	3.3	0.004	0.59	0.0	0.04	17.10	0.00	1.889	5.80	0.06	2.0	98.0	0.0	1.53	0.56	0.70	2.31	3.3	0.005	0.56	0.0	0.04	16.43	0.00	0.757	8.91	2.01	3.9	96.1	0.0	0.45	0.41	0.61	0.81	2.34	29510	1893	11	0	11	0	14655	logfile
✔	7BSV	30168	2024-04-07	2020-03-31	3.0	3.16	—	3.1	0.005	1.15	0.0	0.05	18.88	0.01	1.809	30.62	6.19	7.6	92.2	0.2	-6.02	0.61	0.86	4.20	3.1	0.003	0.89	0.0	0.04	17.76	0.00	0.765	9.21	2.85	5.7	94.3	0.0	-1.14	0.98	0.63	0.88	3.58	9339	1139	6	0	8	4	0	logfile
✔	6ZP5	11336	2024-04-11	2020-07-08	3.1	3.90	3.32	3.6	0.013	0.92	0.0	0.15	16.89	0.00	0.012	14.22	0.52	3.0	97.0	0.0	-0.93	0.67	0.64	2.54	3.6	0.003	0.75	0.0	0.11	14.46	0.00	0.792	9.01	1.63	3.6	96.4	0.0	0.31	0.67	0.82	0.84	2.06	23615	2861	33	0	92	0	0	logfile
✔	6ZP7	11337	2024-04-11	2020-07-08	3.3	4.01	3.43	3.7	0.013	0.92	0.0	0.17	16.89	0.00	0.008	16.12	0.52	3.0	97.0	0.0	-0.92	0.64	0.59	1.49	3.7	0.003	0.76	0.0	0.11	14.58	0.00	0.794	10.08	1.87	3.7	96.3	0.0	0.13	1.32	0.81	0.84	2.12	23615	2861	33	0	92	0	0	logfile
✔	7PT7	13620	2024-04-09	2021-09-26	3.8	3.34	—	3.4	0.007	0.74	4.0	0.05	14.97	0.00	1.865	11.56	0.64	3.3	96.7	0.0	0.56	0.76	0.80	1.56	3.4	0.004	0.59	0.0	0.04	15.90	0.00	0.817	11.45	1.48	3.3	96.7	0.0	0.73	0.30	0.77	0.82	1.42	67420	8451	29	0	50	0	0	logfile
✔	8A1W	15091	2024-04-14	2022-06-02	2.56	2.20	2.53	2.4	0.004	0.56	0.0	0.04	16.54	0.00	2.014	2.96	0.32	1.1	98.9	0.0	1.65	0.60	0.72	3.88	2.4	0.003	0.54	0.0	0.04	16.99	0.00	0.822	7.80	1.41	2.3	97.7	0.0	0.47	1.45	0.63	0.82	3.48	30172	1908	16	0	16	289	14776	logfile
✔	6AP1	8887	2024-04-10	2017-08-16	3.2	3.26	—	3.3	0.016	1.66	2.0	0.09	14.24	0.01	1.198	24.32	3.62	10.9	87.0	2.1	-4.53	0.62	0.58	1.49	3.2	0.003	0.70	0.0	0.04	16.50	0.00	0.830	10.28	1.71	5.1	94.6	0.2	0.86	2.40	0.70	0.69	1.26	18838	2404	24	0	14	0	0	logfile
✔	7NSH	12567	2024-04-07	2021-03-07	3.2	3.39	3.12	3.3	0.003	0.54	0.0	0.05	19.44	0.00	1.187	7.76	0.02	4.2	95.8	0.1	0.71	0.80	0.84	2.70	3.3	0.009	0.75	0.0	0.05	20.18	0.01	0.874	8.89	2.29	5.4	94.6	0.0	0.37	1.22	0.80	0.90	2.66	112448	9643	79	1611	229	2	0	logfile
✔	8UXX	42788	2024-04-11	2023-11-11	3.2	3.48	3.27	3.5	0.012	1.91	8.0	0.10	15.07	0.02	1.821	0.17	2.29	4.4	95.5	0.1	-2.07	0.64	0.74	3.38	3.5	0.004	0.70	1.0	0.04	15.81	0.00	0.884	6.44	1.67	3.4	96.6	0.0	-0.42	2.06	0.72	0.84	2.59	77330	4916	26	0	27	5	38268	logfile

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