Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8CK1	16689	2024-04-08	2023-02-14	3.9	3.75	3.90	3.8	0.004	0.75	0.0	0.05	16.95	0.00	2.200	15.75	0.59	8.4	91.6	0.0	-2.07	0.42	0.81	1.48	3.8	0.003	0.67	0.0	0.04	18.05	0.00	2.127	14.25	4.68	8.4	91.6	0.0	-1.64	0.53	0.42	0.81	1.62	12580	1616	6	0	0	0	0	logfile
✔	7KA2	22756	2024-04-07	2020-09-29	3.6	3.77	—	3.6	0.008	0.96	0.0	0.05	15.20	0.01	2.254	6.36	6.12	3.8	96.2	0.0	-1.99	0.87	0.83	1.20	3.6	0.003	0.68	0.0	0.04	15.57	0.00	2.096	12.25	2.34	2.3	97.7	0.0	1.19	1.23	0.87	0.83	0.66	10472	1372	4	0	0	0	0	logfile
✔	7R1W	14242	2024-04-11	2022-02-03	3.6	4.16	3.69	4.0	0.006	0.69	0.0	0.05	13.74	0.00	1.387	8.79	0.16	4.7	95.0	0.3	-2.64	0.74	0.81	3.05	4.0	0.004	0.55	0.0	0.04	14.56	0.00	2.053	5.86	0.71	4.1	95.9	0.0	-0.08	0.99	0.75	0.83	2.74	23186	1509	6	0	0	0	11363	logfile
✔	5W9M	8788	2024-04-14	2017-06-23	4.7	4.83	4.71	4.7	0.014	1.75	0.0	0.08	10.41	0.01	1.306	3.92	0.09	3.4	96.1	0.6	1.65	0.76	0.77	—	4.6	0.003	0.68	0.0	0.04	12.41	0.00	2.059	10.98	0.03	5.2	94.6	0.2	0.07	1.33	0.77	0.79	—	31126	4021	10	0	0	0	0	logfile
✔	7AA3	11689	2024-04-06	2020-09-03	3.56	3.97	3.53	3.9	0.004	0.66	0.0	0.04	14.11	0.00	2.046	9.33	0.00	10.1	89.9	0.0	-3.38	0.75	0.80	3.29	3.9	0.003	0.63	0.0	0.04	15.68	0.00	2.108	8.29	1.77	8.5	91.5	0.0	-1.84	0.31	0.74	0.79	1.93	8389	1094	2	0	0	0	0	logfile
✔	8EMH	28248	2024-04-08	2022-09-27	3.63	4.77	3.84	3.8	0.004	0.68	0.0	0.04	15.52	0.00	2.084	13.38	0.01	2.8	97.1	0.1	0.72	0.88	0.78	1.41	3.9	0.004	0.67	0.0	0.04	16.80	0.00	2.081	17.64	1.18	3.8	96.1	0.1	1.07	1.60	0.92	0.87	1.30	65678	8025	14	127	0	0	0	logfile
✔	6RJG	4904	2024-04-08	2019-04-26	3.2	3.36	—	3.3	0.008	0.96	0.0	0.06	18.84	0.01	2.297	2.15	0.10	6.8	93.2	0.0	-3.61	0.65	0.85	3.05	3.3	0.002	0.54	0.0	0.04	19.45	0.00	2.175	5.21	2.87	4.6	95.4	0.0	-0.03	0.49	0.65	0.86	2.19	12220	1180	6	123	0	0	0	logfile
✔	7FiM	31603	2024-04-07	2021-07-31	3.4	3.76	—	3.8	0.004	0.83	0.0	0.05	13.92	0.01	2.226	7.19	0.41	2.3	97.7	0.0	-2.72	0.56	0.64	1.94	3.8	0.003	0.61	0.0	0.04	16.50	0.00	2.181	9.28	3.67	3.5	96.5	0.0	-0.60	0.79	0.70	0.81	1.51	9213	1157	6	0	0	0	0	logfile
✔	8AG3	15414	2024-04-05	2022-07-19	3.47	2.17	3.26	2.0	0.002	0.60	0.0	0.04	17.16	0.01	2.143	8.90	0.00	6.6	93.4	0.0	-1.45	0.61	0.73	3.03	1.8	0.003	0.63	0.0	0.05	17.40	0.01	2.085	9.47	4.22	8.2	91.8	0.0	-1.12	0.32	0.62	0.77	2.98	2632	322	2	0	0	0	0	logfile
✔	7TLC	25987	2024-04-11	2022-01-18	2.83	3.28	—	3.2	0.013	1.82	3.0	0.10	13.37	0.02	2.518	0.07	1.54	5.3	94.5	0.2	-1.18	0.34	0.47	4.12	3.2	0.003	0.59	0.0	0.04	15.12	0.00	2.130	5.75	2.12	3.2	96.8	0.0	0.31	0.54	0.50	0.70	3.41	23058	2948	3	0	0	0	0	logfile
✔	6RJ9	4900	2024-04-07	2019-04-26	3.2	3.37	—	3.3	0.006	0.78	0.0	0.05	17.39	0.01	2.292	2.59	0.28	6.7	93.3	0.0	-3.87	0.67	0.86	2.60	3.3	0.002	0.50	0.0	0.04	18.07	0.00	2.227	5.66	1.88	3.4	96.6	0.0	-0.05	0.98	0.65	0.86	1.95	11874	1202	5	97	0	0	0	logfile
✔	7RW9	24711	2024-04-07	2021-08-19	3.9	4.54	3.87	4.2	0.003	0.63	0.0	0.04	13.18	0.00	2.140	7.83	0.11	6.4	93.3	0.3	0.44	0.78	0.69	1.28	4.2	0.003	0.65	0.0	0.04	14.81	0.00	2.136	8.82	2.02	5.5	94.2	0.3	1.51	0.54	0.88	0.84	0.85	10365	1456	4	0	0	0	0	logfile
✔	7RW8	24710	2024-04-08	2021-08-19	3.5	4.25	3.47	3.8	0.004	0.58	0.0	0.04	13.41	0.00	2.069	5.73	0.00	3.5	96.5	0.0	0.99	0.80	0.72	2.46	3.8	0.003	0.53	0.0	0.04	14.48	0.00	2.101	6.01	1.22	3.3	96.7	0.0	2.20	0.98	0.89	0.85	1.87	12572	1712	4	0	0	0	0	logfile
✔	7ZJD	14745	2024-04-10	2022-04-10	2.94	3.35	2.98	3.2	0.003	0.56	0.0	0.04	14.12	0.00	2.311	5.44	0.00	6.6	93.1	0.3	0.00	0.66	0.84	2.31	3.2	0.005	0.66	0.0	0.04	16.37	0.00	2.285	7.11	1.58	7.8	91.9	0.3	0.43	0.93	0.65	0.85	2.49	19360	2388	4	0	0	0	0	logfile
✔	7N9T	24262	2024-04-13	2021-06-18	3.18	3.58	3.19	3.3	0.003	0.95	0.0	0.12	12.54	0.00	2.032	4.89	2.91	3.8	96.1	0.1	0.13	0.72	0.67	1.35	3.3	0.002	0.58	0.0	0.04	14.06	0.00	2.165	7.40	1.13	4.4	95.6	0.0	-0.02	1.77	0.78	0.78	2.20	28884	3726	6	0	0	0	0	logfile
✔	8DQK	27655	2024-04-05	2022-07-19	4.0	4.35	4.38	3.9	0.003	0.72	0.0	0.05	12.56	0.01	2.134	12.28	0.00	2.6	97.2	0.1	0.14	0.55	0.56	—	4.1	0.004	0.69	0.0	0.04	15.44	0.00	2.107	19.61	3.97	4.4	95.4	0.1	0.29	1.71	0.60	0.70	—	5891	733	1	0	0	0	0	logfile
✔	7ZJi	14749	2024-04-10	2022-04-11	3.4	3.74	3.36	3.6	0.003	0.66	0.0	0.04	14.20	0.00	2.197	10.45	0.10	8.3	91.5	0.3	-0.82	0.69	0.77	1.05	3.6	0.004	0.73	0.0	0.04	16.32	0.00	2.084	11.95	2.22	9.5	90.2	0.3	-0.78	1.28	0.69	0.81	1.00	19231	2375	4	0	0	0	0	logfile
✔	7R5R	14334	2024-04-07	2022-02-11	2.44	3.05	—	2.9	0.004	0.66	0.0	0.04	26.94	0.00	2.226	6.02	0.31	2.5	97.5	0.0	-0.10	0.59	0.39	3.60	2.8	0.004	0.63	0.0	0.04	28.05	0.00	2.178	5.83	1.87	3.2	96.8	0.0	2.10	0.92	0.81	0.87	3.39	11625	779	12	266	0	0	0	logfile
✔	7DZW	30915	2024-04-08	2021-01-26	3.45	4.19	3.55	3.3	0.019	2.27	0.0	0.00	4.81	0.01	2.240	2.28	0.00	5.1	93.3	1.6	-1.27	0.44	0.25	—	3.3	0.003	0.81	0.0	0.00	4.68	0.00	2.178	3.51	0.00	11.9	88.0	0.1	-2.05	1.99	0.77	0.73	—	13452	3363	3	0	0	0	0	logfile
✔	7ZPP	14860	2024-04-15	2022-04-28	4.5	3.20	4.54	4.6	0.003	0.64	0.0	0.04	15.32	0.00	2.166	11.62	0.00	3.8	96.1	0.1	0.57	0.62	0.53	—	4.4	0.004	0.81	1.0	0.05	15.82	0.00	2.067	19.12	0.03	5.2	94.7	0.1	-0.45	1.73	0.67	0.66	—	33171	3903	20	80	0	0	0	logfile

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