Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8i24	35131	2024-04-12	2023-01-13	3.36	2.98	3.63	2.9	0.004	0.61	0.0	0.05	18.26	0.00	2.029	7.97	0.91	3.4	96.6	0.0	-0.46	0.66	0.79	2.42	2.9	0.003	0.54	0.0	0.04	19.34	0.00	1.953	9.74	2.28	3.7	96.3	0.0	-0.26	0.34	0.67	0.81	2.21	26321	3068	9	110	3	0	0	logfile
✔	8WG5	37503	2024-04-09	2023-09-20	3.05	3.73	3.03	3.0	0.003	0.59	0.0	0.04	26.06	0.00	2.099	12.21	0.32	2.6	97.4	0.0	1.36	0.83	0.71	0.29	3.0	0.004	0.66	0.0	0.04	26.82	0.00	2.082	13.16	2.42	2.8	97.2	0.0	1.67	1.57	0.91	0.87	1.41	14965	1135	12	294	0	0	0	logfile
✔	8Q2L	18112	2024-04-05	2023-08-02	2.2	2.31	2.29	2.3	0.013	2.22	2.0	0.22	14.08	0.01	2.506	1.04	0.00	1.9	98.1	0.0	-2.11	0.40	0.87	5.99	2.3	0.005	0.66	0.0	0.05	19.41	0.00	2.466	3.42	2.38	1.4	98.6	0.0	-1.82	1.25	0.41	0.93	7.18	3300	432	6	0	0	0	0	logfile
✔	8SC1	40334	2024-04-05	2023-04-04	2.92	3.14	2.89	3.2	0.003	0.68	0.0	0.04	10.47	0.01	2.266	1.15	0.00	2.5	97.5	0.0	-0.78	0.58	0.81	2.42	3.2	0.003	0.61	0.0	0.04	13.73	0.00	2.195	2.73	1.89	1.4	98.6	0.0	1.94	1.99	0.61	0.83	1.25	3447	446	1	0	0	0	0	logfile
✔	8WBA	37418	2024-04-06	2023-09-09	3.1	3.27	3.07	3.3	0.002	0.54	0.0	0.04	16.65	0.00	2.289	9.38	0.32	1.6	98.4	0.0	1.56	0.62	0.79	2.30	3.3	0.003	0.57	0.0	0.04	16.90	0.00	2.177	9.61	4.38	2.4	97.6	0.0	1.68	0.25	0.62	0.81	2.12	8646	1106	3	0	2	0	0	logfile
✔	8JZU	36753	2024-04-05	2023-07-06	3.05	3.36	3.11	3.4	0.004	0.59	0.0	0.04	13.67	0.00	2.206	6.34	0.00	2.1	97.9	0.0	1.94	0.54	0.74	2.37	3.4	0.003	0.63	0.0	0.04	15.80	0.00	2.193	10.18	2.32	2.3	97.7	0.0	1.66	1.65	0.58	0.81	2.40	3741	488	3	0	1	0	0	logfile
✔	8SC4	40337	2024-04-05	2023-04-04	3.46	3.65	3.43	3.6	0.004	0.68	0.0	0.04	10.98	0.03	2.296	2.80	0.00	2.9	97.1	0.0	-0.96	0.57	0.77	2.57	3.6	0.003	0.80	0.0	0.04	15.54	0.00	2.168	11.75	2.63	2.2	97.8	0.0	2.52	1.21	0.57	0.79	2.72	3544	456	2	0	1	0	0	logfile
✔	8URB	42488	2024-04-11	2023-10-25	3.4	3.75	3.45	3.8	0.002	0.52	0.0	0.04	15.02	0.00	2.269	2.86	0.17	2.2	97.8	0.0	-0.61	0.73	0.82	3.32	3.8	0.004	0.53	0.0	0.04	15.83	0.00	2.140	3.79	2.35	4.1	95.9	0.0	0.06	1.12	0.72	0.82	2.35	22714	1359	7	41	2	0	11060	logfile
✔	8TN9	41411	2024-04-07	2023-08-01	3.05	3.46	—	3.3	0.003	0.67	0.0	0.05	14.36	0.00	2.022	10.85	0.25	10.0	90.0	0.0	-2.35	0.78	0.78	2.58	3.3	0.003	0.68	0.0	0.05	15.92	0.00	2.153	9.76	2.29	8.8	91.2	0.0	-2.46	0.43	0.78	0.78	2.37	11145	1368	2	0	4	0	0	logfile
✔	8BHQ	16066	2024-04-13	2022-10-31	3.3	3.04	3.34	3.4	0.007	1.38	0.0	0.04	8.53	0.01	2.140	1.61	0.00	1.8	98.2	0.0	2.16	0.67	0.80	3.80	3.4	0.003	0.53	0.0	0.04	12.69	0.00	2.026	3.62	1.07	2.5	97.5	0.0	1.04	1.71	0.67	0.81	3.39	27215	1680	10	0	10	0	13415	logfile
✔	8UCW	42142	2024-04-09	2023-09-27	3.64	4.65	3.41	2.7	0.008	0.57	0.0	0.04	20.73	0.00	2.087	3.44	0.00	3.0	97.0	0.0	1.69	0.87	0.75	0.97	2.5	0.002	0.53	0.0	0.04	20.24	0.00	1.321	6.44	1.03	3.0	97.0	0.0	1.87	1.27	0.89	0.80	0.85	15967	868	5	61	4	0	7703	logfile
✔	8EKK	28205	2024-04-13	2022-09-21	3.28	3.66	3.37	3.6	0.002	0.48	0.0	0.04	17.36	0.00	2.191	5.91	0.15	4.5	95.5	0.0	-1.12	0.79	0.88	3.00	3.6	0.002	0.49	0.0	0.04	17.84	0.00	2.230	5.94	2.66	4.7	95.3	0.0	-0.39	0.24	0.79	0.87	2.79	29624	3731	14	0	14	0	0	logfile
✔	8JSo	36625	2024-04-06	2023-06-20	3.4	3.73	3.46	3.7	0.003	0.67	0.0	0.04	13.94	0.00	2.220	9.19	0.10	5.1	94.9	0.0	-0.64	0.65	0.80	1.60	3.7	0.003	0.67	0.0	0.04	15.78	0.00	2.169	8.97	2.54	4.5	95.5	0.0	-0.11	0.93	0.64	0.81	0.82	9045	1145	6	0	1	0	0	logfile
✔	8CC6	16555	2024-04-09	2023-01-26	3.2	3.42	3.26	3.4	0.004	0.71	0.0	0.04	16.30	0.00	2.207	4.14	0.05	2.0	98.0	0.0	1.09	0.71	0.85	3.05	3.4	0.003	0.52	0.0	0.04	15.35	0.00	2.197	5.52	1.76	2.1	97.9	0.0	0.57	0.24	0.70	0.84	3.03	16640	1950	20	0	30	0	0	logfile
✔	8FYH	29578	2024-04-13	2023-01-26	3.4	4.33	3.45	2.6	0.003	0.51	1.0	0.04	15.12	0.00	1.508	10.75	0.05	6.6	93.2	0.2	-0.26	0.75	0.70	1.67	2.5	0.004	0.57	0.0	0.04	15.45	0.00	1.913	44.22	3.97	9.5	90.3	0.2	-0.85	1.91	0.84	0.82	1.29	25833	3692	15	18	14	0	195	logfile
✔	8JLo	36402	2024-04-06	2023-06-02	3.52	3.78	3.53	3.7	0.005	0.74	0.0	0.04	14.26	0.00	2.257	7.12	0.25	4.5	95.5	0.0	-0.64	0.59	0.79	2.09	3.7	0.003	0.59	0.0	0.04	16.26	0.00	2.215	6.84	1.63	4.5	95.5	0.0	0.36	0.39	0.64	0.82	1.66	7343	922	5	0	1	0	0	logfile
✔	8DN3	27553	2024-04-09	2022-07-10	3.55	3.91	3.65	3.9	0.003	0.56	0.0	0.05	11.89	0.01	2.181	12.00	1.97	3.9	96.0	0.1	0.56	0.61	0.81	2.45	3.9	0.002	0.58	0.0	0.04	13.94	0.00	2.218	9.19	2.56	3.9	96.1	0.0	0.65	0.92	0.61	0.82	1.87	14315	1699	10	0	61	0	0	logfile
✔	8i23	35130	2024-04-12	2023-01-13	3.03	2.25	3.02	2.1	0.003	0.53	0.0	0.04	16.99	0.00	2.151	8.90	0.15	4.3	95.7	0.0	-0.28	0.79	0.77	2.80	2.1	0.003	0.57	0.0	0.04	18.85	0.00	2.101	9.15	3.04	4.1	95.9	0.0	0.10	0.35	0.78	0.80	2.39	26272	3066	9	108	3	0	0	logfile
✔	8iDB	35362	2024-04-06	2023-02-12	3.9	4.38	3.73	4.2	0.005	1.04	0.0	0.06	11.65	0.01	2.256	5.21	0.32	5.8	93.7	0.5	-3.59	0.69	0.73	0.55	4.2	0.004	0.70	0.0	0.04	14.50	0.00	2.125	16.00	5.67	8.0	91.7	0.3	-1.47	0.49	0.70	0.76	0.45	6835	982	4	0	0	0	0	logfile
✔	8HJV	34839	2024-04-11	2022-11-23	3.1	2.67	3.34	3.2	0.019	2.02	2.0	0.52	20.90	0.04	1.901	19.96	0.99	5.7	94.3	0.0	-0.85	0.60	0.79	1.73	3.1	0.004	0.88	0.0	0.04	18.93	0.00	2.047	8.12	4.02	5.7	94.3	0.0	1.84	0.73	0.62	0.84	2.05	22193	2265	68	0	67	0	0	logfile

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