Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6KiV	9999	2023-04-29	2019-07-20	4.0	4.16	—	4.0	0.007	0.90	0.0	0.05	22.52	0.01	2.263	5.24	0.00	9.6	90.4	0.0	-3.80	0.75	0.75	—	4.0	0.003	0.71	0.0	0.04	24.34	0.00	2.155	13.06	0.19	6.9	93.1	0.0	-1.82	0.85	0.77	0.79	—	20719	1865	16	290	1	0	0	logfile
✔	6KFH	9973	2023-04-25	2019-07-07	3.6	3.70	—	3.7	0.007	0.73	0.0	0.05	14.75	0.00	2.255	9.85	0.00	12.3	87.7	0.0	-3.15	0.66	0.82	0.94	3.7	0.003	0.71	0.0	0.04	17.60	0.00	2.197	9.34	0.41	8.2	91.8	0.0	0.16	0.63	0.61	0.81	0.91	20840	2544	8	0	0	0	0	logfile
✔	6KFG	9972	2023-04-26	2019-07-07	3.8	3.91	—	3.9	0.007	0.77	0.0	0.05	14.04	0.00	2.148	13.10	0.67	11.5	88.5	0.0	-4.38	0.63	0.82	1.64	3.9	0.005	0.78	0.0	0.04	16.41	0.00	2.166	13.65	1.09	8.9	91.1	0.0	-0.56	1.36	0.63	0.82	1.37	22264	2704	8	0	0	0	0	logfile
✔	6KF3	9960	2023-04-27	2019-07-06	3.9	4.00	3.77	4.0	0.008	1.33	1.0	0.07	12.71	0.01	2.102	4.54	4.74	13.7	85.5	0.8	-5.00	0.71	0.74	1.75	4.0	0.004	0.83	0.0	0.05	15.63	0.01	2.003	11.65	0.28	12.0	87.9	0.1	-2.43	2.22	0.72	0.76	1.16	26375	3297	15	0	6	0	0	logfile
✔	7CGP	9958	2023-04-22	2020-07-01	3.7	3.87	—	3.8	0.006	0.66	0.0	0.04	14.71	0.00	1.852	10.54	0.53	5.1	94.9	0.0	-2.68	0.68	0.81	1.54	3.8	0.005	0.94	0.0	0.05	17.56	0.00	2.080	17.60	1.50	4.3	95.7	0.0	0.60	1.08	0.69	0.82	1.03	12433	1569	16	0	1	0	0	logfile
✘	6KAC	9955	2023-04-28	2019-06-21	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	77947	7858	126	0	318	595	0	logfile
✔	6KA4	9954	2023-04-24	2019-06-20	3.4	3.49	—	3.4	0.006	0.82	0.0	0.05	13.68	0.01	2.076	15.29	0.00	5.0	95.0	0.0	-0.10	0.77	0.83	1.80	3.4	0.003	0.58	0.0	0.04	15.91	0.00	2.155	8.57	0.15	3.6	96.4	0.0	1.28	0.49	0.79	0.85	1.21	17500	2136	4	0	0	0	0	logfile
✔	6K9Q	9952	2023-04-28	2019-06-17	3.1	3.28	—	3.5	0.007	1.09	4.0	0.06	11.35	0.01	1.554	9.55	0.29	6.3	93.6	0.1	-3.33	0.51	0.77	2.45	3.5	0.004	0.70	0.0	0.04	14.47	0.00	2.064	17.13	0.59	5.5	94.5	0.0	-1.18	0.57	0.51	0.80	1.98	76902	10451	26	0	0	0	0	logfile
✔	6K9L	9950	2023-04-29	2019-06-16	4.27	4.50	—	4.2	0.001	0.49	0.0	0.04	9.31	0.00	2.240	4.79	4.95	4.6	95.4	0.0	-3.11	0.84	0.71	—	4.2	0.002	0.68	0.0	0.04	9.69	0.00	2.113	12.22	0.00	7.1	92.9	0.0	0.72	1.80	0.85	0.75	—	30601	5103	2	0	0	0	0	logfile
✔	6K7X	9944	2023-04-26	2019-06-10	3.27	3.51	—	3.4	0.008	1.07	0.0	0.06	17.58	0.01	2.270	3.56	0.21	4.2	95.8	0.0	-4.41	0.80	0.85	3.00	3.4	0.003	0.57	0.0	0.04	16.37	0.00	2.208	5.95	0.04	3.6	96.4	0.0	0.89	0.43	0.81	0.87	2.29	22944	2622	24	0	30	0	0	logfile
✔	6K7N	9942	2023-04-21	2019-06-07	2.84	2.94	2.68	2.9	0.013	1.53	0.0	0.07	15.24	0.01	2.046	6.84	0.44	8.0	91.9	0.1	-3.74	0.61	0.85	3.92	2.9	0.003	0.67	0.0	0.04	16.37	0.00	1.939	9.86	2.01	6.5	93.5	0.0	-0.51	0.47	0.65	0.87	3.41	10544	1308	5	0	8	0	0	logfile
✘	6K7M	9941	2023-04-21	2019-06-07	2.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10591	1307	5	0	9	0	0	logfile
✔	6K7L	9939	2023-04-21	2019-06-07	2.83	2.93	2.65	2.9	0.012	1.15	0.0	0.07	15.29	0.01	1.976	4.79	0.17	7.5	92.3	0.2	-3.27	0.58	0.83	3.57	2.9	0.003	0.65	0.0	0.05	16.82	0.00	1.952	8.73	1.22	6.1	93.9	0.0	-0.04	0.46	0.71	0.88	3.11	10615	1317	5	0	8	0	0	logfile
✔	6K7K	9937	2023-04-21	2019-06-07	3.04	3.15	2.84	3.1	0.011	1.45	0.0	0.07	15.05	0.01	2.000	5.46	0.35	7.1	92.9	0.0	-3.51	0.63	0.85	3.58	3.1	0.003	0.63	0.0	0.04	16.25	0.00	1.913	8.70	0.35	5.5	94.5	0.0	0.10	0.98	0.68	0.87	3.01	10586	1309	5	0	10	0	0	logfile
✔	6K7J	9935	2023-04-21	2019-06-07	3.08	3.21	2.88	3.2	0.013	1.23	0.0	0.07	15.30	0.01	2.159	5.68	0.17	8.6	91.2	0.2	-3.98	0.57	0.82	3.51	3.2	0.004	0.68	0.0	0.05	16.23	0.00	2.133	10.15	0.35	5.9	93.9	0.2	-1.03	0.93	0.68	0.84	3.16	10602	1311	5	0	8	0	0	logfile
✔	6K7i	9934	2023-04-21	2019-06-07	3.22	3.34	3.11	3.3	0.015	1.31	0.0	0.08	14.93	0.01	2.253	5.97	0.78	8.9	90.7	0.4	-4.41	0.60	0.84	3.87	3.3	0.004	0.69	0.0	0.05	16.17	0.00	2.181	8.75	0.09	6.0	94.0	0.0	-0.87	0.45	0.68	0.82	3.09	10590	1310	5	0	7	0	0	logfile
✔	6K7H	9932	2023-04-21	2019-06-07	3.22	3.37	3.03	3.3	0.011	1.11	0.0	0.06	15.66	0.01	2.274	5.60	1.13	6.5	93.5	0.0	-3.82	0.65	0.85	3.45	3.3	0.004	0.66	0.0	0.05	16.46	0.00	2.158	8.84	0.26	6.3	93.7	0.0	-0.46	0.95	0.65	0.87	2.89	10577	1312	4	0	6	0	0	logfile
✔	6K7G	9931	2023-04-21	2019-06-07	3.3	3.42	3.12	3.4	0.012	1.18	0.0	0.07	15.60	0.01	2.262	5.65	0.43	9.1	90.7	0.2	-4.12	0.61	0.85	3.53	3.4	0.003	0.65	0.0	0.04	16.80	0.00	2.129	10.23	0.00	7.0	93.0	0.0	-0.64	0.97	0.69	0.88	3.22	10569	1313	4	0	6	0	0	logfile
✔	6K42	9912	2023-04-21	2019-05-23	4.1	4.04	—	4.1	0.005	0.82	0.0	0.05	9.20	0.01	2.288	4.50	0.31	5.4	94.6	0.0	-4.37	0.60	0.63	—	4.0	0.003	0.74	0.0	0.04	13.02	0.00	2.096	13.34	0.21	5.5	94.5	0.0	-1.40	2.63	0.66	0.73	—	8816	1116	6	0	1	0	0	logfile
✔	6K41	9911	2023-04-20	2019-05-23	2.9	2.88	—	2.9	0.009	1.07	0.0	0.06	10.20	0.01	2.166	3.99	0.44	5.1	94.9	0.0	-2.62	0.73	0.85	4.09	2.9	0.003	0.60	0.0	0.04	15.25	0.00	2.060	6.02	2.85	3.6	96.4	0.0	0.62	0.67	0.75	0.83	3.41	8430	1077	6	0	1	0	0	logfile

• Page 1 of 372
• next →